Query= MSMg01no471_b06.b1 MSMg01no471_b06.b1 CHROMAT_FILE:
MSMg01no471_b06.b1 PHD_FILE: MSMg01no471_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:12 2005
(672 letters)
>mm_chr16_54000514_54001583
Length = 1070
Score = 1199 bits (620), Expect = 0.0
Identities = 656/670 (97%), Gaps = 6/670 (0%)
Strand = Plus / Minus
Query: 5 gaattcat--aattaccttaaaatatgcaagtttgaagacatggtttaaatgctctctta 62
|||||||| || || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 885 gaattcataaaaata--ttaaaatatgcaagtttgaagacatggtttaaatggtctctta 828
Query: 63 tttctgtaactattttaaatatccatccagaaataaaatggaaacaaagttctcaattaa 122
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 827 tttctgtaactattttaaatatccatccagaaataaaatgggaacaaacttctcaattaa 768
Query: 123 ctttgcactatctccaaatatttctatgggctttgcatactctgtggtgtctgtctcctg 182
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctttgcactatctccaagtatttctatgggctttgcatactctgtggtgtctgtctcctg 708
Query: 183 agcttacttttctaattcccaaaattatttttcatccccatagtattaatgatccttcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agcttacttttctaattcccaaaattatttttcatccccatagtattaatgatccttcat 648
Query: 243 agtcaaacccttttcttactatatccatgagtctccctaataaatactttaatattgtgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agtcaaacccttttcttactatatccatgagtctccctaataaatactttaatattgtgt 588
Query: 303 ctcttgctgctctgacatagtgttttctgtttccctcttctaagtttcatacacacacaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctcttgctgctctgacatagtgttttctgtttccctcttctaagtttcatacacacacaa 528
Query: 363 tgacacttttgttaatatttaaggtgagacaagttcctggcttttcatttttgcagttaa 422
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 527 tgacacttttgttaatgtttaaggtgaga--agttcctggcttttcatttttgcagttaa 470
Query: 423 tttaatttgttttctagtacacatattctcaagtatacaaatgtgcctttgtagttttat 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttaatttgttttctagttcacatattctcaagtatacaaatgtgcctttgtagttttat 410
Query: 483 ggatttgtttactgccgttctgagtacaagtcctagtacctacacatatgagctatatgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggatttgtttactgccgttctgagtacaagtcctagtacctacacatatgagctatatgc 350
Query: 543 tctatcattgacctaacacctagtcagccactttgtggattttgacccagttcctttttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tctatcattgacctaacacctagtcagccactttgtggattttgacccagttcctttttt 290
Query: 603 ccatctttatgagtcaaaataattttctctaacataatgtggcatttgttggagtctgtg 662
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ccatctttatgaatcaaaataattttctctaacataatgtggcatttgttggagtctgtg 230
Query: 663 atttttctcc 672
||||||||||
Sbjct: 229 atttttctcc 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b06.g1 MSMg01no471_b06.g1 CHROMAT_FILE:
MSMg01no471_b06.g1 PHD_FILE: MSMg01no471_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:12 2005
(494 letters)
>mm_chr16_53841336_53842228
Length = 893
Score = 835 bits (432), Expect = 0.0
Identities = 472/494 (95%), Gaps = 15/494 (3%)
Strand = Plus / Plus
Query: 1 aatactgacatggagagatgaaatttcagattaagttattgaaatcaggattaattactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactgacatggagagatgaaatttcagattaagttattgaaatcaggattaattactt 260
Query: 61 tgtaaaaatattgcttcaagaaaaagaatgctataatgtggcactattatatttgctcca 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaaa-tattgcttcaagaaaaagaatgctataatgtggcactattatatttgctcca 319
Query: 121 gaataataaaatttactattcagttagttgtctttcccataaggtacaatgtcaattttc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 gaataataaaatttactattcagttagttgtctttcccataaggttcaatgtcaattttc 379
Query: 181 catggaaaatttttcttttccccacaggagcccagatctatttattgcaatgcattttat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catggaaaaattttcttttccccacaggagcccagatctatttattgcaatgcattttat 439
Query: 241 tcacacaaacacacacacacacacacacacacacacacacacacacacacacacacacac 300
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaca--------------cacacacacacacacacacacacacacacacacacacac 485
Query: 301 acacacactactgaatgaggtctagagagagataaccaaatgtttaggagcacatactgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acacacactactgaatgaggtctagagagagataaccaaatgtttaggagcacatactgc 545
Query: 361 tcttgtagggaagccaggtttcattaccactacccacatgggagctcaaaaccttctata 420
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 546 tcttgtagggaagccaggtttcattaccattacccacatgggagctcaaaactttctata 605
Query: 421 actttagaggcagacgaccagacagctttcctgatgtccttcagacactgtatgaatatt 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 606 actttagaggcagacgaccagacagctttcctaatgtccttcagacactgtatgaatatg 665
Query: 481 acgtttgtgtgtgt 494
| ||||||||||||
Sbjct: 666 aggtttgtgtgtgt 679
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 277 acacacacacacacacacacacacacacaca 307
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 275 acacacacacacacacacacacacacacaca 305
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 273 acacacacacacacacacacacacacacaca 303
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 271 acacacacacacacacacacacacacacaca 301
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 269 acacacacacacacacacacacacacacaca 299
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 267 acacacacacacacacacacacacacacaca 297
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 265 acacacacacacacacacacacacacacaca 295
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 263 acacacacacacacacacacacacacacaca 293
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 261 acacacacacacacacacacacacacacaca 291
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 259 acacacacacacacacacacacacacacaca 289
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 257 acacacacacacacacacacacacacacaca 287
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 255 acacacacacacacacacacacacacacaca 285
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 253 acacacacacacacacacacacacacacaca 283
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 251 acacacacacacacacacacacacacacaca 281
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 249 acacacacacacacacacacacacacacaca 279
|||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacaca 671
Score = 58.7 bits (30), Expect = 9e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 279 acacacacacacacacacacacacacacac 308
||||||||||||||||||||||||||||||
Sbjct: 701 acacacacacacacacacacacacacacac 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 158
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 17
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
