BAC Information

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BAC

Clone NameMSMg01-471H03
Chromosome16 (Build37)
Map Location 49,097,883 - 49,098,411
singlet/doubletsinglet
Overlap geneMyh15
Upstream geneEG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik
Downstream gene1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471H03.T7 (MSMg01no471_h03.b1)MSMg01-471H03.TJ (MSMg01no471_h03.g1)
ACCAG554211AG554212
length736761
length of high quality
(start - end)		478 (81 - 558)---
definitionCHROMAT_FILE: MSMg01no471_h03.b1 PHD_FILE: MSMg01no471_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:41 2005CHROMAT_FILE: MSMg01no471_h03.g1 PHD_FILE: MSMg01no471_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGA
GCCGCGGAATTCAAGAATTTCTTTGGATGAGTTAGTTTGAGGCTGTCCCC
CCAACCACAAAAAGCAAAATACAAAAACAGTAACAAAAATACACTACATA
TAGTTGATAGACTGGATATGTGAAGGCTAGAGCAGGTTTGAACGTCATGG
AATTACCTTCTGCCTCACTGAGAAAACTAGGACAGTGGCAGAGTTTACAA
GGGGTAAGGAAAATGTTTCATCTACTTTACACTACTAATGCCATCTTTAA
ACTTAAGTCTAATAGTGAAAATGATGTTTTTGTAACTGTCTGTTTAACTT
ATCCATCTGGAGATGTGTCTCAGTAGTAGAATACTTGCCTAGCATAGATT
TGTTAATGCCAACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCA
GAGACAGAGAGACAAAGAGAGAGAGACAGAGAGAGATGTTTATCTTCTTC
TAGTCTTATAGTGCTCAGAAGTAAGCAAACAAGGAATTTTATGACATTTT
ATTTGAGGAAACATTTAAGTTAACCTTGGTGACTTTTAAGGCCATATATT
ATGTCCCGCATTTAGCATAGTGCTCTGTTCCTACACGCTTTTACGCGACC
GGTCATGAAAGACGCATCATACCGGAATCTTCTGCG

NCCCAACATATAAACCTCCTTTGCTCCCCGCCTATATTACCTTTATTATT
AATNNNNCGGCACCCCCCCATATTTTTTGCCAATTGCATAAATGGGGNTA
AGGGCCCTGGGCCGGNCACGTCACCTGTTTCCCCTACGAAAACATTTTAA
GGNTGGAACACCCTAATTAGGTAATTGCCACCCCGCCGGGGGAAATTTTC
TTCAACCCCCGAAAGGGGAAAATACCTTGGTAAAAGGGCCTTGGAAGAAA
AAACAACCCCTGGAAAAAAAATGTTTCAACATCCCTTAATCATCAGAAGA
AATGGCAAATCAAAACCAACCCCTGAAGATTCCCATTCTCAACACCAGTC
CAAGAAATGGGCTAAAAGAACCAAAAAAATTCCCGGGTGAAAAACCCAAA
TGGCCTTGGGCAAAAGAAAATTGGAAAAAAAAAAAAAGAAAAACCCCCCC
CCCCCACTTGGGTAAAAGGGGGCGGCCACCTTTTTTAAAACGGCCCCCTT
GGGAAGAAAAACGGGGGGGGGGCCTTTTTTAAAAAGAAATATTAAAGGGG
GGGGGTTTGTGGGAAAAAAAAAGAAAAAAATTTGGGTCCCCCCCCCCCCC
ACCAAACCCCCAAAAAGAGGGTGGTTTAAAAAAAAACCCTCTTTGTGTCC
CCCCCCCATTTGTGGGGGGGAAAGAAAAACTCTTTTTATATAAAAAAAAA
CCCCCCCGCGGGGGAAACACACCCCTCCCCTAAAGAAAAACCCCCCTTTC
CACGAAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_h03.b1 MSMg01no471_h03.b1 CHROMAT_FILE:
MSMg01no471_h03.b1 PHD_FILE: MSMg01no471_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:41 2005
         (478 letters)



>mm_chr16_49097682_49098559
          Length = 878

 Score =  748 bits (387), Expect = 0.0
 Identities = 468/529 (88%), Gaps = 52/529 (9%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttagtttgaggctgtccccccaaccacaaaaagcaaaatacaaaaacagtaacaaaaata 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttagtttgaggctgtccccccaaccacaaaaagcaaaatacaaaaacagtaacaaaaata 261

                                                                       
Query: 62  cactacatatagttgatagactggatatgtgaaggctagagcaggtttgaacgtcatgga 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 cactacatatagttgatagactggatatgtgaaggctagagcaggtttgaacgtcatgaa 321

                                                                       
Query: 122 attaccttctgcctcactgagaaaactaggacagtggcagagtttacaaggggtaaggaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attaccttctgcctcactgagaaaactaggacagtggcagagtttacaaggggtaaggaa 381

                                                                       
Query: 182 aatgtttcatctactttacactactaatgccatctttaaacttaagtctaatagtgaaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatgtttcatctactttacactactaatgccatctttaaacttaagtctaatagtgaaaa 441

                                                                       
Query: 242 tgatgtttttgtaactgtctgtttaacttatccatctggagatgtgtctcagtagtagaa 301
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgatggttttgtaactgtctgtttaacttatccatctggagatgtgtctcagtagtagaa 501

                                                                       
Query: 302 tacttgcctagcatagatttgttaatgccaacacacacacacacacacacacacacacac 361
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacttgcctagcatagatttgtcaatgccaacacacacacacacacacacacacacacac 561

                                                                       
Query: 362 acacacacacacacacacaca--------------------------------------- 382
           |||||||||||||||||||||                                       
Sbjct: 562 acacacacacacacacacacatacacacacacacacacacacacacacacacacacacac 621

                                                                       
Query: 383 -------------cacacacagagagagagagagagagagagagagaggcagagacagag 429
                        |||||||| | | | | | ||||||||||||||||||||||||||||
Sbjct: 622 acacacatacacacacacacacacacacacacagagagagagagagaggcagagacagag 681

                                                            
Query: 430 agacaaagagagagagacagagagagatgtttatcttcttctagtctta 478
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agacaaagagagagagacagagagagatgtttatcttcttctagtctta 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 179
Number of extensions: 51
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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