BAC Information

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BAC

Clone NameMSMg01-472B06
Chromosome16 (Build37)
Map Location 15,139,559 - 15,140,032
singlet/doubletsinglet
Overlap genenone
Upstream gene4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
Downstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472B06.T7 (MSMg01no472_b06.b1)MSMg01-472B06.TJ (MSMg01no472_b06.g1)
ACCAG554696AG554697
length767529
length of high quality
(start - end)
476 (61 - 536)74 (61 - 134)
definitionCHROMAT_FILE: MSMg01no472_b06.b1 PHD_FILE: MSMg01no472_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:35 2005CHROMAT_FILE: MSMg01no472_b06.g1 PHD_FILE: MSMg01no472_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCATAAAAACATGAGTCCCAGGTATAGAGGGAAATCT
TGCCTCAAAAGGAATAGAGACAAAGGACACATTACATCATCTGTTGGTTG
GAGTCCTGTTCCTAGAGCACAGAGGTATGTATGTCTGCACACTGCATAGA
CACACAAAGATACAAGCATCTATGGACTTTGCCTTAGATGAGCTTTATTC
AGTGAGGAACTAGAATTTAATTTGGCCATTCTTTGACCTTCAAAATAAAT
GCCTATTGGAAGGTTTCTATGGATTTCTTGGATTCTTCCAGCACCACGAT
GAAGCCACAGTCTAATAGAAGCAACTCTGGAAAGAAAAACCATGAACCTC
TAAAGATGCAGTCCTTTAAAAATGCAGTAAATATACTGGTAAAAACAATT
TCAAAATCAGCCGGGCGTGATGGCACACGCCTTTAATCCCAGCACTCGGG
AAGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAG
TGAGTTCCAGGACAGCCAGTGTTATACATAGAAACCCTGTCTTGAAAAAA
CACAAACAAAAAACAAACATCAAAAAAGTTCTTAATCACCCCTTTTTTCA
ATTTCAGAAATTATCTAATAACATAACAATCTACCCCAGAAATACTTGTC
CTTGGTGCTGCTTAATGTCCTTGTTGCTCCTACTGCTGTCAGCCTATAGC
CGCCTAACAATTTTTTC
NCCCCATGTATGGTAGCTGGGCCGCTTCCTCACTTTAGGACTATAATTGA
CCGCGGATTCGAACTCTTCAGCTGGGGAACAGGGGTACCAGTGAGTACAG
CTTTACAGGTAAGTCTGGTCTTGACTTTCTAACGAATTCAAGACCGGCTA
TCCNAAATGAAGGGGAAAAGCTACAAGACCCTGGCTGAATTTCACAATTC
AAATGCCTTCAAATAAGGGGAAAAATTTACAAGAAGTTTGCCCTTATTTT
TTAAGGGAAACCTTTTTTTTTTTTCCGTTTCCCGGGGTAAAAAGGGGTAA
AATTTGGGAAAATTCCCCGCCCTCTCCAAAAAAAGGGCGGAAAAAAATTG
CCCCAAAAAAATTTTTTTCCCCCCCCTAAAAAAACGGTTTTTTCTGAGGG
TTTAACAGCGGNNAAATTTTTTCTTTCTGCCCCCCNACAAAAAATCCCCC
CCGTTTTTTTTTTGTGTGGCAAAAAAAAAGTTAAAAATCTTTTTTTTGTG
TCCCCTTTTTTTTTGTTGAAAAAAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_b06.b1 MSMg01no472_b06.b1 CHROMAT_FILE:
MSMg01no472_b06.b1 PHD_FILE: MSMg01no472_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:35 2005
         (476 letters)



>mm_chr16_15139357_15140232
          Length = 876

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccataaaaacatgagtcccaggtatagagggaaatcttgcctcaaaaggaatagagaca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tccataaaaacatgagtcccaggtatagagggaaatcttgcctcaaaaggaatagagaca 262

                                                                       
Query: 63  aaggacacattacatcatctgttggttggagtcctgttcctagagcacagaggtatgtat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaggacacattacatcatctgttggttggagtcctgttcctagagcacagaggtatgtat 322

                                                                       
Query: 123 gtctgcacactgcatagacacacaaagatacaagcatctatggactttgccttagatgag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtctgcacactgcatagacacacaaagatacaagcatctatggactttgccttagatgag 382

                                                                       
Query: 183 ctttattcagtgaggaactagaatttaatttggccattctttgaccttcaaaataaatgc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctttattcagtgaggaactagaatttaatttggccattctttgaccttcaaaataaatgc 442

                                                                       
Query: 243 ctattggaaggtttctatggatttcttggattcttccagcaccacgatgaagccacagtc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctattggaaggtttctatggatttcttggattcttccagcaccacgatgaagccacagtc 502

                                                                       
Query: 303 taatagaagcaactctggaaagaaaaaccatgaacctctaaagatgcagtcctttaaaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taatagaagcaactctggaaagaaaaaccatgaacctctaaagatgcagtcctttaaaaa 562

                                                                       
Query: 363 tgcagtaaatatactggtaaaaacaatttcaaaatcagccgggcgtgatggcacacgcct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcagtaaatatactggtaaaaacaatttcaaaatcagccgggcgtgatggcacacgcct 622

                                                                 
Query: 423 ttaatcccagcactcgggaagcagaggcaggcggatttctgagtttgaggccag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttaatcccagcactcgggaagcagaggcaggcggatttctgagtttgaggccag 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)