BAC Information

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BAC

Clone NameMSMg01-472E22
Chromosome16 (Build37)
Map Location 29,197,194 - 29,197,628
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717
Downstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472E22.T7 (MSMg01no472_e22.b1)MSMg01-472E22.TJ (MSMg01no472_e22.g1)
ACCAG554872AG554873
length760794
length of high quality
(start - end)
439 (67 - 505)459 (77 - 535)
definitionCHROMAT_FILE: MSMg01no472_e22.b1 PHD_FILE: MSMg01no472_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:54 2005CHROMAT_FILE: MSMg01no472_e22.g1 PHD_FILE: MSMg01no472_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGATGTCCAGCTTCTCCCAGAGATGTCTGCCAACCGATTCCCC
TTATCTTTTCCAGCCTTCTCAACCCCACCTCTGTTCTCCTTATTCATGAT
CCCTAGCCCCTCTCCCAGCCAGTTCCCTCTCTCCATCCACTTTGGTGTCT
AATTTATTTCCCCTTCTGAGAGTGATTCAAGTATCTTCCCTGGGGCCCTC
CTTGTTTCTTAGTTTTTGTGAAGTCTGTGGATTGTAGCATGGTTATCCTA
TACTTTATGGCTAATATCTACTTATAAGTAAGTGCATACCATGAGTGTCT
TTCTGGGTCTGGGTTACCTCACTCAGGGTGATAATTCTAGTTCCATCCAT
TTCCCTGCAAATGTTATGAATCCTTGTTTTTAGTAGCTAAGGAGTATTCC
ATTGTGTAAATGTACCACATTTTCTTTATCCATTCTTTGGNTAAGGGACA
TCTGGGTTGTTTCCAGTTTCTGGGTATTAAGAGTCTTCTATAACATAACT
GAGCAATTTTCCTTGTAGTGTGGTGGATCATCTTTTGTGTATAAGCCCCG
TAAAAATATAGCTTGATGTAAAACCATTTCAAGGTTTTTGAAAAACTGGC
ATAATGACTTGGTAGGTTGTTTGTAAGTATTGCACCCTTCTAACAAGGAG
CTAATGTTCCATTTTTCCTCTCCCGCCATCCCTGTGATGTTCCCCTTTTT
TTTTTATTTT
NCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAGAGCTGGCCTCAGTATA
TAAGGCTTTTGTGATTGAGAAAGAAGCCCCAGGCTTCCACAAGCATCTGT
TCATGACACAAGTACACGTGCACACATGCAAACACAGACACACATGCATA
CCCCCCTCATATGGACACGAATCACACACACACATATAACAGATACACAT
ATTCCCTTATACACACACACACACACACACACACACACACACAAACACAC
ACACAAGATTGGTCTTTGCTCTCTCATCAAACCTGAATAAGGATCTGAAA
TAAATGGGCAATGTTGGCCTCTCACTTCTGCCCTTGTCTCGCCCCAGTGC
CCACTGCCAGCACAGCAGCCTGGCTCGGGAGACCTCTCACATCCTTCCTT
CTTTTGGCTGGTTAGAGAGAACATGACTCTGGCCATTTTTCTTCATTCTC
CCCTTTGCCTTACCCTTCTACCAANCTTCCTTAATCATGGAAATGTATAA
GCGATTTCCCCACATAATGACCTGAAAAGGTTTTCATTTCCTAACAGTTA
TTAAAATTGGAAAGGGAAGGCACAAAAAATGGGTGGGTGTTTCAAAAAGT
GGAAGGGCTTGTATAAAACAAAAAATTTGCCGAATGACAAAGTTCCCGAA
ATACTCCTGGGTTATAAAAAACACTACCCCCCCCCCGCCTAAAAATAGAA
ATTGTAAGTACACAAATCCCTCGGCTCTTTTATATATATCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_e22.g1 MSMg01no472_e22.g1 CHROMAT_FILE:
MSMg01no472_e22.g1 PHD_FILE: MSMg01no472_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:54 2005
         (459 letters)



>mm_chr16_29196994_29197852
          Length = 859

 Score =  692 bits (358), Expect = 0.0
 Identities = 421/465 (90%), Gaps = 36/465 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagagagctggcctcagtatataaggcttttgtgattgagaaagaagccccaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgagagagctggcctcagtatataaggcttttgtgattgagaaagaagccccaggctt 260

                                                                       
Query: 61  ccacaagcatctgttcatgacacaagtacacgtgcacacatgcaaacacag------aca 114
           |||||||||||||||||  ||||||||||||||||||||||||||||||||      |||
Sbjct: 261 ccacaagcatctgttcacaacacaagtacacgtgcacacatgcaaacacagatacacaca 320

                                                                       
Query: 115 cacatgcatacccccctcatatggacacgaatcacacacacacatataacagatacacat 174
           |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 321 cacatgcatatccccctcatatagacacaaatcacacacacacatataacagatacacat 380

                                                                       
Query: 175 attcccttatacacacacacacacacacacacacacacacacaaacacacacacaagatt 234
           ||||||||||||||                              ||||||||||||||||
Sbjct: 381 attcccttatacac------------------------------acacacacacaagatt 410

                                                                       
Query: 235 ggtctttgctctctcatcaaacctgaataaggatctgaaataaatgggcaatgttggcct 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggtctttgctctctcatcaaacctgaataaggatctgaaataaatgggcaatgttggcct 470

                                                                       
Query: 295 ctcacttctgcccttgtctcgccccagtgcccactgccagcacagcagcctggctcggga 354
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 471 ctcacttctgcccttgtctcgccccagtgcccgctgccagcacagcagcctggctcggga 530

                                                                       
Query: 355 gacctctcacatccttccttcttttggctggttagagagaacatgactctggccattttt 414
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gacctctcgcatccttccttcttttggctggttagagagaacatgactctggccattttt 590

                                                        
Query: 415 cttcattctcccctttgccttacccttctaccaancttccttaat 459
           |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 591 cttcattctcccctttgccttacccttctaccaaccttccttaat 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)