Query= MSMg01no473_k12.b1 MSMg01no473_k12.b1 CHROMAT_FILE:
MSMg01no473_k12.b1 PHD_FILE: MSMg01no473_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:49 2005
(488 letters)
>mm_chr16_81966797_81967684
Length = 888
Score = 920 bits (476), Expect = 0.0
Identities = 485/488 (99%)
Strand = Plus / Plus
Query: 1 tgatccctaagtgggctagttacatgtgtactagtgctttcaaaggggagaatagaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatccctaagtgggctagttacatgtgtactagtgctttcaaaggggagaatagaaagc 260
Query: 61 ttaaaaagcagtagtgacaatacagatgctgcttagctgacaaggacttgatggacaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaagcagtagtgacaatacagatgctgcttagctgacaaggacttgatggacaagc 320
Query: 121 attgcttagagacaaatgtaattgcttgtttcaacccgtgggtgcaggaggaggtcacag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 attgcttagagacaaatgtaattgcttgtttcaacccgtgggcgcaggaggaggtcacag 380
Query: 181 acattttaggtttatgcttaaatcaaggctagtcctgaagcacagaagagcctttcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattttaggtttatgcttaaatcaaggctagtcctgaagcacagaagagcctttcccct 440
Query: 241 ttcatgtacctgttacgcttgttccataaaataaagtgactctttcattctattaatcac 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatgtacctgttacacttgttccataaaataaagtgactctttcattctattaatcac 500
Query: 301 tgacttatatttagtataaagaacttcatttaaacaatatatcccttgtgatgtaaggga 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacttatatttagtataaacaacttcatttaaacaatatatcccttgtgatgtaaggga 560
Query: 361 ttaacattataaacgttgatagcaaaaagtactattattaatgctaataattcatattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacattataaacgttgatagcaaaaagtactattattaatgctaataattcatattaa 620
Query: 421 ctcaacaattaatatattaatttacaaagaagacaattacagtataacctaactcttcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaacaattaatatattaatttacaaagaagacaattacagtataacctaactcttcaa 680
Query: 481 taagaaga 488
||||||||
Sbjct: 681 taagaaga 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_k12.g1 MSMg01no473_k12.g1 CHROMAT_FILE:
MSMg01no473_k12.g1 PHD_FILE: MSMg01no473_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:49 2005
(575 letters)
>mm_chr16_82163936_82164910
Length = 975
Score = 876 bits (453), Expect = 0.0
Identities = 475/487 (97%), Gaps = 10/487 (2%)
Strand = Plus / Minus
Query: 99 caaatgaaattagatattcaagaagaaaatcacaaaatcctaaagattaaaaatatcacc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 caaatgaaattagatattcaagaagaaaatcacaaaatcctaaagattaaaaatatcacc 916
Query: 159 agtaagcattacattgcttactttttatacacactgctaagtacaactaatgatgccaat 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agtaagcattacattgcttactttttatacacactgctaagtacaactaatgatgccaat 856
Query: 219 aatgtatctttctcaagattctgagctaaataaaggtaattctagtaaaatgtaagaaat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aatgtatctttctcaagattctgagctaaataaaggtaattctagtaaaatgtaagaaat 796
Query: 279 tg--------cat-g-tgtgtataagcacatgtacaaagagattataaaactaatactaa 328
|| ||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgcaaaactacatagatttctataagcacatgtacaaagagattataaaactaatactaa 736
Query: 329 agtttatttttcttgcaatctagcttgaacagtattgctaattaaaaccttcaaatataa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agtttatttttcttgcaatctagcttgaacagtattgctaattaaaaccttcaaatataa 676
Query: 389 atgtaaagactgttaagatagtatggtgatgacaccttaaatttaagacaagccgccatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atgtaaagactgttaagatagtatggtgatgacaccttaaatttaagacaagccgccatt 616
Query: 449 ggtcagtgtagtgtgtagacggcaaagagcatgtacttttgatgaagcatgaaaagttaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggtcagtgtagtgtgtagacggcaaagagcatgtacttttgatgaagcatgaaaagttaa 556
Query: 509 attacttgtttcatactacattttggaaaccaggcaatttcatggaatgtaacagtgatg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attacttgtttcatactacattttggaaaccaggcaatttcatggaatgtaacagtgatg 496
Query: 569 ttcactg 575
|||||||
Sbjct: 495 ttcactg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
