BAC Information

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BAC

Clone NameMSMg01-473M16
Chromosome16 (Build37)
Map Location 18,084,362 - 18,281,096
singlet/doubletdoublet
Overlap geneProdh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8
Upstream geneYpel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6
Downstream geneD16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473M16.T7 (MSMg01no473_m16.b1)MSMg01-473M16.TJ (MSMg01no473_m16.g1)
ACCAG556007AG556008
length792826
length of high quality
(start - end)		484 (74 - 557)304 (78 - 381)
definitionCHROMAT_FILE: MSMg01no473_m16.b1 PHD_FILE: MSMg01no473_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:01 2005CHROMAT_FILE: MSMg01no473_m16.g1 PHD_FILE: MSMg01no473_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,280,613 - 18,281,096)(18,084,362 - 18,084,665)
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATCCGCGGA
ATTCTAGTGTTCTTTCTTTTCCCAAGTGTGGAGGCAAAAGCTAAGGTAGG
GACTTGCCTTGAACAACACTGTCTAGGGCTTTTTGGGCTTTGGTTCTCCA
TGTAGAAGTTCTTACCTTGTTCCATATACTATCCTACGGGTGCAATTAGG
ATTCATCAGGCAGATAGAAACTTGGCAAAACCCTCAGAAATACAAAAACC
TGTTCAAGAGGCTTTGACACAGTCTTATGCTTATAAAGGATTTGCAGGAT
GTTTTTTGTGTTCTGTGCAGGTCTTGTTCGTCCACCTACAGAGCCATTGC
CTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTG
CACAGAGAGTCTCGAGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAAC
AGGAAGCATACGGGTAGGGGAGTCATCTGCCATGTATTTAGGCTTGTCAG
TTTTCAGTGCTTGTCAGCTTGTCAGACAGACTAAAAGTAGTCCTGATAAC
CCGTTTCAATGTCACCATCTACAGAAACATGATCCTCCTCTAAGCAGTAT
CCCCTGCCTACTTTATAAGAAAATGAAGGACACTGAGGAACGATAACCTA
ACCGCGATCTTTGCCCCTTTTGGAGAAGGGGACACCTTGGCCAGCCCTTG
TGGTTTATCTTGTTAATTTGGATTTCCCTCCGGATAATTCTTGACTCCCC
TGGCGTGGAGAACTCTGTGCTCACTGGTACGTAATACGCCCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCTACAGCCTCAAACTGTAC
AGGACTATGTGGGGAGCGGGATATGGCCAGGGCCAGAGTTTGCAGTTCTA
TCCCTCAACCCTCCACTGGTGCAGGCCCACAAAAGCACAGCACTCCTGTC
TGCAGGAAGCAAGAATTCCAGGCACAACTCATGAGGGCTGCTGGCAATCA
GATCAAAGGCTCTCCCAGTCTTGGCCACCACCTAGCTGAGGCCGAAACCC
TGGTGCATTTCAGGGTCACACCTGTGCCTTGCAACACCAGAAAAGCGGGT
CTTACTCCATCTCTTTGCGCTCCGCCTCCTCAGGGCTCAGATCTTCCTCC
ACTCCATAGTCCAGGATAAAGCCAACACCCAAAGGCTTTTGTTTGTGCCC
GGATCAGAAGGCCTGATAAAACTTCCTGGTCCTCCGCCAGCCCACAAAAA
GGCCCATAAAAGGGCATCTTCCATCCAATCTTCCCGAAACATCCTTTTGC
CCCCCAAAAGGTTTCTTGGGAAACTTGGGAACAACTGTGAAAAAAAAAAG
GGAAGCCCCTTTTGTGTGGCCCCCTGGCCCCCCCGGTTTTGGTGTAAACC
CTGATACTCGCAGTGGTTATTTAAAAAAAACCTTTTAAAAAAAAGTGGGT
CTCCTCTGGTTTGTCCACACGTGGAAACATTCTCTTTTTTCTGGGTTGTA
TGGAAAAAAAACAAGACCCATTTCTTCTCCCCTCCTTTTGGGTGCCTCAT
ATATAACGTTCTCTCCTCAAAACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_m16.b1 MSMg01no473_m16.b1 CHROMAT_FILE:
MSMg01no473_m16.b1 PHD_FILE: MSMg01no473_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:01 2005
         (484 letters)



>mm_chr16_18280413_18281296
          Length = 884

 Score =  905 bits (468), Expect = 0.0
 Identities = 480/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtgtggaggcaaaagctaaggtagggacttgccttgaacaacactgtctagggctttt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagtgtggaggcaaaagctagggtagggacttgccttgaacaacactgtctagggctttt 625

                                                                       
Query: 61  tgggctttggttctccatgtagaagttcttaccttgttccatatactatcctacgggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgggctttggttctccatgtagaagttcttaccttgttccatatactatcctacgggtgc 565

                                                                       
Query: 121 aattaggattcatcaggcagatagaaacttggcaaaaccctcagaaatacaaaaacctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattaggattcatcaggcagatagaaacttggcaaaaccctcagaaatacaaaaacctgt 505

                                                                       
Query: 181 tcaagaggctttgacacagtcttatgcttataaaggatttgcaggatgttttttgtgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaagaggctttgacacagtcttatgcttataaaggatttgcaggatgttttttgtgttc 445

                                                                       
Query: 241 tgtgcaggtcttgttcgtccacctacagagccattgcctgatggatggatcatgactttt 300
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtgcaggtcgtggccgtccacctacagagccattgcctgatggatggatcatgactttt 385

                                                                       
Query: 301 cataattctggagtccctgtatacctgcacagagagtctcgagtggtcacttggtccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cataattctggagtccctgtatacctgcacagagagtctcgagtggtcacttggtccaga 325

                                                                       
Query: 361 ccctacttcttgggaacaggaagcatacgggtaggggagtcatctgccatgtatttaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccctacttcttgggaacaggaagcatacgggtaggggagtcatctgccatgtatttaggc 265

                                                                       
Query: 421 ttgtcagttttcagtgcttgtcagcttgtcagacagactaaaagtagtcctgataacccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtcagttttcagtgcttgtcagcttgtcagacagactaaaagtagtcctgataacccg 205

               
Query: 481 tttc 484
           ||||
Sbjct: 204 tttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_m16.g1 MSMg01no473_m16.g1 CHROMAT_FILE:
MSMg01no473_m16.g1 PHD_FILE: MSMg01no473_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:01 2005
         (304 letters)



>mm_chr16_18084162_18084865
          Length = 704

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagctacagcctcaaactgtacaggactatgtggggagcgggatatggccagggccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctacagcctcaaactgtacaggactatgtggggagcgggatatggccagggccaga 260

                                                                       
Query: 61  gtttgcagttctatccctcaaccctccactggtgcaggcccacaaaagcacagcactcct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtttgcagttctatccctcaaccctccactggtgcaggcccacaaaagcacagcgctcct 320

                                                                       
Query: 121 gtctgcaggaagcaagaattccaggcacaactcatgagggctgctggcaatcagatcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgcaggaagcaagaattccaggcacaactcatgagggctgctggcaatcagatcaaa 380

                                                                       
Query: 181 ggctctcccagtcttggccaccacctagctgaggccgaaaccctggtgcatttcagggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctctcccagtcttggccaccacctagctgaggccgaaaccctggtgcatttcagggtc 440

                                                                       
Query: 241 acacctgtgccttgcaacaccagaaaagcgggtcttactccatctctttgcgctccgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacctgtgccttgcaacaccagaaaagcgggtcttactccatctctttgcgctccgcct 500

               
Query: 301 cctc 304
           ||||
Sbjct: 501 cctc 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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