Query= MSMg01no473_m17.b1 MSMg01no473_m17.b1 CHROMAT_FILE:
MSMg01no473_m17.b1 PHD_FILE: MSMg01no473_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:01 2005
(483 letters)
>mm_chr16_16379767_16380645
Length = 879
Score = 830 bits (429), Expect = 0.0
Identities = 468/487 (96%), Gaps = 12/487 (2%)
Strand = Plus / Minus
Query: 1 aactaatgtagcattaaaaaatacagaaactttattgttacatacactgagtccatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aactaatgtagcattaaaaaatacagaaactttattgttacatacactgagtccatttag 620
Query: 61 tatctcatacccatagatggtttatggatgacatcttggggttggataacctatcatgat 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 619 tatctcatacccatagatggtttatgtatgacatcttggggttggataacctatcatggt 560
Query: 121 agggggagtgagagtccattttctccatttgcatttctcatctgaaaatgtttcagaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agggggagtgagagtccattttctccatttgcatttctcatctgaaaatgtttcagaatg 500
Query: 181 cctaaggtctcctaaatattactttggttccaactcctatagtactaagtttctgcactc 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctaaggtctcctgaatattactttggttccaactcctatagtactaagtttctgcactc 440
Query: 241 agatttgtct----gttttttgcccatttaactcatgtttgactcatgtcaaattcaaat 296
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 agatttgtctgagag----ttgcccatctaactcatgtttgactcatgtcaaattcaaat 384
Query: 297 gtttgatttggtccctttcagatggcactggacaaagaaagtattgtactgggaggctgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtttgatttggtccctttcagatggcactggacaaagaaagtattgtactgggaggctgg 324
Query: 357 ctgtagctcgtggctacctcctccagattggtgaatctggtctataactcactgaagtct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgtagctcgtggctacctcctccagattggtgaatctggtctataactcactgaagtct 264
Query: 417 ttgtaactgcaaaataattttctagctcatatgactacctgggtatagtgactggctgcc 476
||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||
Sbjct: 263 ttgtaactgcaaaatcattttctacctcata----tacctgggcatagtgactggctgcc 208
Query: 477 taaagac 483
|||||||
Sbjct: 207 taaagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 879
Length adjustment: 10
Effective length of query: 473
Effective length of database: 869
Effective search space: 411037
Effective search space used: 411037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_m17.g1 MSMg01no473_m17.g1 CHROMAT_FILE:
MSMg01no473_m17.g1 PHD_FILE: MSMg01no473_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:01 2005
(482 letters)
>mm_chr16_16215298_16216179
Length = 882
Score = 917 bits (474), Expect = 0.0
Identities = 480/482 (99%)
Strand = Plus / Plus
Query: 1 aaccactgccactgaacgtgttcttctccaaggggcatcattctggtgctgaattaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccactgccactgaacgtgttcttctccaaggggcatcattctggtgctgaattaaaca 260
Query: 61 cacatttggtgtgctttgtaacaagaagtttaaacccaaggaaatgcagtcatgaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatttggtgtgctttgtaacaagaagtttaaacccaaggaaatgcagtcatgaatcaa 320
Query: 121 aagccctaagtacccagagaacagcaagggtgccacagagctttcaaatgcaaagttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccctaagtacccagagaacagcaagggtgccacagagctttcaaatgcaaagttctc 380
Query: 181 ccagccaaagagaattttgaaaatctgtttggaggaactgtgatattagctcaccagtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccaaagagaattttgaaaatctgtttggaggaactgtgatattagctcaccagtcc 440
Query: 241 cacccccacactctgaaactaggagctttaaatctcagaagtttattaggcttgtgcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacccccacactctgaaactaggagctttaaatctcagaagtttattaggcttgtgcagg 500
Query: 301 gagcatagttggagatgcatgcgttactgtagaagtgtgcacggatatttcatagtgccg 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcatagctggagatgcatgcgttactgtagaagtgtgcacggatatttcatagtgccg 560
Query: 361 agttgacatgggagaacaaagactcagccttggtgcttctgttccgttgagtggtttttt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttgacatgagagaacaaagactcagccttggtgcttctgttccgttgagtggtttttt 620
Query: 421 ccaactaagggataaagccctgagctatttttgattaccacagagctctttggcaggctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaactaagggataaagccctgagctatttttgattaccacagagctctttggcaggctg 680
Query: 481 ca 482
||
Sbjct: 681 ca 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
