BAC Information

Click to search

BAC

Clone NameMSMg01-474C14
Chromosome16 (Build37)
Map Location 61,193,618 - 61,194,158
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474C14.T7 (MSMg01no474_c14.b1)MSMg01-474C14.TJ (MSMg01no474_c14.g1)
ACCAG556288AG556289
length1,433728
length of high quality
(start - end)
---541 (76 - 616)
definitionCHROMAT_FILE: MSMg01no474_c14.b1 PHD_FILE: MSMg01no474_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:31 2005CHROMAT_FILE: MSMg01no474_c14.g1 PHD_FILE: MSMg01no474_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATACGTTAACAATACGTCGGTGGTTCTNCAGCGGTGGACAGCGACGGCG
TCTCAGCCAGCGGACGTGACGGTCGTATTCACGGTACACACGCATCCTCG
ACACCTCCAGCACAGAAAGGACAGAGGCGAGGAGGCGAACAGTGCGAGCG
ATGGGTGCGAGATGCGTGCGGTCGTAGGCACTCCGGGCGCCGGCGAGTAT
CGAGATAAACCCGCTCGCCACTCCTCACGCAAGCAAGAGCGACGAATACG
CGGTGACGTAGCGAAGTGTTGTGACTTGGATCTTGCGAATGAGTTGTCTG
ATGGGCGGTGTCGGAATAACGAGATCTGACACTGACACATTAGATGATTC
GTGCTACGTTGGGNCCGCGATATACCGATACGCTGATTTGTTTCTTACAC
ATACGTAGTTATACATGAGAAGCAATATATGAAACCAAAGATGAGTACAT
TAAACAAAATACTATATGTTAAGTATATAACGAAAAGAAATAAGAACGGA
ATGAAGAAGAGTTGGTGGAGTAGACAAGCACACGACACAGTCAACACAAG
ACGAGATCAAGAAAAATAGATAGCATGAGATACAAGATATAGAATAGATA
ACAGAATGAAATGTGGAATCGAAAGAAATAGTATAGTATGAAGCATAACA
GAGCTGTATTACGATCCACGATCGCGCTAACAGAGATCGCGAACAACGAT
AAGGACATATTAAGTGTACTAATGANCCGACCGTTATTGTGCGATGCAAG
CTATGAGTGGCAATGCGGAGTTCAATGTGTGACACGCACATGTGTATGGA
TAGTGCGGACAGAGCACTATAGACATCGTTATGAGTAAGCTGTGACGATT
CACACGATAGACGGTAGACGGACGGGAGACGTATTACGTATATGCTAACG
CGTTATAGAATATTATGTCGTGATACAGCTCGATCGCCGCTGAAATGCAT
CCNCGGATCGAGAGTATGGATTGTTGATTGCCTGCGATAAGCCACGCTCG
CTACAGTATTGCACATGATCGTTGTGCACGTGTATGATGTCTGTAGCGTG
ATAATGCAGCGAGGCTACCGAGTCATAACACTGATGATGACTTCTNCGGT
TGTAATACGCTGACANATGCTAAGAATAGCGATAGTGTATCAGCAAAGCG
AGATGTGTCGAAGANAGATGAGAGCGATGATGCGAACGCAGTGAGAGACC
GACACGTGCACACGCGAGACGACTGCACGAGACGCAGCAGAGGCNTCATC
ACTAAGCGCAGTAATACGAGACGATGGTGCTTAATGGTCATGGAGACGAA
CGTGATTATCGTGACGCGCCGACAATCTCGATCTCACATCGGAGACTATA
TAGAGACAGAGAGAGNCTCGTACACTACAAGCCGCTGACATTAGAGTAGG
TAGAATATACAGAGCGATAATACAGCACAATGN
NCCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCATTCTTTTCCTATTAGTACAGA
GAGAATTTCATTGTAAGAAGTAAATAGATTCTTTGAAATGTGAAATACAA
TTTGTTCATGAATGATTTAATAATGCAATAAATATATAGAGTATTAATAA
ATTCAGATATGACTATATAATTATAATATTAAATATATTTACTGTTTAAA
AAGTATTAATTCCATTCTAGGCAACATGTGGAATTTATAAAGATTATGAA
ATCACTTAAAAATTTATATTTTCTGACTACCTGAATTTGATCCAGTTATT
CTACATGGTAATAGGAGGGAATAGTCTTACATGTTGTCTTTTGACTTTCA
TGTATATACATATATTTGCATAGAATACACTCAAAAAGAAATGTGTAAAA
AAGTTATTAGAAAAGTGATGCTTTCATGATATGAAGTGTAAATGATATTT
TCTATAATGATTTGGCTAACAAATACAAAAAGTTTACTTGAATGAGCAGG
CACATCAGGTTGCTACTCTCTATGCCAGAGTTTCTCCAAATCCTAACTTT
GTACTCTTTCCATTGTTATGAACATGTTTAAAGTAAAACATAAGTGTAAA
AAATGGATAATGAAAGGAATATCTAGTGGGAAAAAAAAAAAATGAGTGTT
TTTGTGTGAATATATATTTTTTATCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_c14.g1 MSMg01no474_c14.g1 CHROMAT_FILE:
MSMg01no474_c14.g1 PHD_FILE: MSMg01no474_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:31 2005
         (541 letters)



>mm_chr16_61193252_61194192
          Length = 941

 Score =  977 bits (505), Expect = 0.0
 Identities = 532/541 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcattcttttcctattagtacagagagaatttcattgtaagaagtaaatagattctttg 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 907 agcattcttttccgattagtacagagagaatttcattgtaagaagtaaatagattcttgg 848

                                                                       
Query: 61  aaatgtgaaatacaatttgttcatgaatgatttaataatgcaataaatatatagagtatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 847 aaatgtgaaatacaatttgttcatgaatgatttaataatgcaataaatatgtagagtatt 788

                                                                       
Query: 121 aataaattcagatatgactatataattataatattaaatatatttactgtttaaaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aataaattcagatatgactatataattataatattaaatatatttactgtttaaaaagta 728

                                                                       
Query: 181 ttaattccattctaggcaacatgtggaatttataaagattatgaaatcacttaaaaattt 240
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttaattcaattctaggcaatatgtggaatttataaagattatgaaatcacttaaaaattt 668

                                                                       
Query: 241 atattttctgactacctgaatttgatccagttattctacatggtaataggagggaatagt 300
           |||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 667 ataaactctgactacctgaatttgatccagttaatctacatggtaataggagggaatagt 608

                                                                       
Query: 301 cttacatgttgtcttttgactttcatgtatatacatatatttgcatagaatacactcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttacatgttgtcttttgactttcatgtatatacatatatttgcatagaatacactcaaa 548

                                                                       
Query: 361 aagaaatgtgtaaaaaagttattagaaaagtgatgctttcatgatatgaagtgtaaatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aagaaatgtgtaaaaaagttattagaaaagtgatgctttcatgatatgaagtgtaaatga 488

                                                                       
Query: 421 tattttctataatgatttggctaacaaatacaaaaagtttacttgaatgagcaggcacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tattttctataatgatttggctaacaaatacaaaaagtttacttgaatgagcaggcacat 428

                                                                       
Query: 481 caggttgctactctctatgccagagtttctccaaatcctaactttgtactctttccattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 caggttgctactctctatgccagagtttctccaaatcctaactttgtactctttccattg 368

            
Query: 541 t 541
           |
Sbjct: 367 t 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)