Query= MSMg01no474_d04.b1 MSMg01no474_d04.b1 CHROMAT_FILE:
MSMg01no474_d04.b1 PHD_FILE: MSMg01no474_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:34 2005
(551 letters)
>mm_chr16_78776222_78777172
Length = 951
Score = 909 bits (470), Expect = 0.0
Identities = 531/556 (95%), Gaps = 15/556 (2%)
Strand = Plus / Minus
Query: 4 ggaattccatctgtttc-c-gttttaccttatgcatgaattttcattgtctgtgatttat 61
||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggaattccatctg--tcactgttttaccttatgcatgaattttcattgtctgtgatttat 813
Query: 62 acctaaataacaatttcttttactctaaactaacttccttgtaggactagaatttaactc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acctaaataacaatttcttttactctaaactaacttccttgtaggactagaatttaactc 753
Query: 122 caggggacccagagtttcttggaattgtt-agagacaatctaatacctacatttcttacc 180
|||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 752 caggggacccagagtttcctggaattgttaaaagacagtctaatacctacatttcttacc 693
Query: 181 ttgttccacaaaataaaatgagaaagaatactatcaacttcatttagcaataccaagatt 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 692 ttgttccacaaaataaaatgagaaagaatactatcaacttcatttagtaataccaaaatt 633
Query: 241 ttcctaataccagaaccatatactaacacaat----attttggaaaactatacactaata 296
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 632 ttcccaataccagaaccatatactaacacaataaaaa----ggaaaactatacactaata 577
Query: 297 cttaaata-aaagtcataaacttggaggagaaagggccagtagttagacatagaggagaa 355
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttaaa-acaaagtcatgaacttggaggagaaagggccagtagttagacatagaggagaa 518
Query: 356 aggagtgaaagtaaatgaatacagtacacagaaaattctcaaaaatattttaaattatca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aggagtgaaagtaaatgaatacagtacacagaaaattctcaaaaatattttaaattatca 458
Query: 416 aaagaataaaattttaataaaattattgcaaaaataaatttaaattggtacactgtaact 475
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaagaataaagttttaataaaattattgcaaaaataaatttaaattggtacactgtaact 398
Query: 476 aaaagataattgcagaccaacgtttctgatatacatacccacaaatattctcaacaaaat 535
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaagaaaattgcagaccaacgtttttgatatacatacccacaaatattctcaacaaaat 338
Query: 536 attccaagctgaattc 551
||||||||||||||||
Sbjct: 337 attccaagctgaattc 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_d04.g1 MSMg01no474_d04.g1 CHROMAT_FILE:
MSMg01no474_d04.g1 PHD_FILE: MSMg01no474_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:34 2005
(479 letters)
>mm_chr16_78637643_78638521
Length = 879
Score = 880 bits (455), Expect = 0.0
Identities = 473/479 (98%)
Strand = Plus / Plus
Query: 1 tggccctgggaaaatggaaatgggaagtgagagttgagccaactcctgcccattgctatg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tggccttgggaaaatggaaatgggaagtgagagttgagccaactcctgcccgttgctatg 260
Query: 61 aagaatttgcgttacttcttaggtgactgcagatgaactttcagtgctgaccacagtgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaatttgcgttacttcttaggtgactgcagatgaactttcagtgctgaccacagtgcc 320
Query: 121 ttttggtaacccttctttctgcaggcccaggtgccgtgttcagacaacagtcagtgaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttggtaacccttctttctgcaggcccaggtgccgtgttcagacaacagtcagtgaacg 380
Query: 181 ctgaacgtatcccatcagagtgattctgagaaactgttctcatttttccactctttaaaa 240
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 381 ctgaacgtatcccatcagagtgattttgagaagctgttctcatttttccactctttaaaa 440
Query: 241 gtttttataaaagttaacattcccagtggtcaggaactgtaattccttacaaatctctgt 300
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 441 gtttttataaaagttaacattcccagttgtcaagaactgtaattccttacaaatctctgt 500
Query: 301 gctagtcctttatggagattgatagtattaaaaaaagaagtataagaaacatcttggtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagtcctttatggagattgatagtattaaaaaaagaagtataagaaacatcttggtgt 560
Query: 361 tttcaatgaataggaacagcacacaagaaaaaacaccagtaatcacgaaagtacaaatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaatgaataggaacagcacacaagaaaaaacaccagtaatcacgaaagtacaaatca 620
Query: 421 caaatgcaggcgaatgagtgggatgttcctggattgacggggttccgaagaggtgatgg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatgcaggcgaatgagtgggatgttcctggattgacggggttccgaagaggtgatgg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
