Query= MSMg01no474_k04.b1 MSMg01no474_k04.b1 CHROMAT_FILE:
MSMg01no474_k04.b1 PHD_FILE: MSMg01no474_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:09 2005
(453 letters)
>mm_chr16_77305986_77306838
Length = 853
Score = 760 bits (393), Expect = 0.0
Identities = 435/449 (96%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 6 gaattcccccaaactc-tcggtcttactcttgtccatctcatctttgaaaactgaggtat 64
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattcccccaaac-cataggtcttactcttgtccatctcatctttgaaaactgaggtat 595
Query: 65 tttacactcagtatcagggcataacattgggtatcataacaaaaaaggagggcatttttg 124
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 594 tttacactcagtatcagggtgtaacattgggtatcataacaaaaaaggaggtcatttttg 535
Query: 125 acccattgtttctctggctattttctataccaatgagaaatctaggatgcttaaaacata 184
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acccattgtttctccagctattttctataccaatgagaaatctaggatgcttaaaacata 475
Query: 185 taacaactgtcacagtagtggtagctaaaacctctttttgaccaagttcaaaggatgaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 taacaactgtcacagtagtggtagctaaaacctctttttgaccaagttcaaaggatgaaa 415
Query: 245 cattctaaagaaaacattgacaatcggatttcactctcaattttttgttaagggtatata 304
||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 414 catactaaagaaaacattgacaattggatttcactcccaattctttgttaagggtatata 355
Query: 305 tcttttgtaatgactgctgatacatttttcaggattgatgctagactatccactcagtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcttttgtaatgactgctgatacatttttcaggattgatgctagactatccactcagtga 295
Query: 365 aaatgtagtaaaaccattgttttctacattgtcttagcctggatgatgtcacaaagacaa 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 294 aaatgtagtaaaaccattgttttctacattgtctcagcctggatgatgtcacaaagacaa 235
Query: 425 ggttacttccatctgaaaaatgcaaaaag 453
|||||||||||||||||||||| ||||||
Sbjct: 234 ggttacttccatctgaaaaatgaaaaaag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_k04.g1 MSMg01no474_k04.g1 CHROMAT_FILE:
MSMg01no474_k04.g1 PHD_FILE: MSMg01no474_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:09 2005
(482 letters)
>mm_chr16_77127116_77127997
Length = 882
Score = 901 bits (466), Expect = 0.0
Identities = 478/482 (99%)
Strand = Plus / Plus
Query: 1 ttagaaataacattcaaatctggacacaacctacatctgtcagcagtcaactgacaaatt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaataacattcaaatctgggcacaacctacatctgtcagcagtcaactgacaaatt 260
Query: 61 gcaccatatgcatgcagtggattattacatagaattaaaagcatgctcactgaagccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaccatatgcatgcagtggattattacatagaattaaaagcatgctcactgaagccact 320
Query: 121 tatatcaatgggaagaaaccatgaatgaacgccaccgcacaattgtgcacccagtagagt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tatatcaatgggaagaaaccatgaatgaacgccgccgcacaattgtgcacccagtagagt 380
Query: 181 ttcatgtattaaatgttccaaaacccaagttaaagccaagttacaagaaggcgctcacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgtattaaatgttccaaaacccaagttaaagccaagttacaagaaggcgctcacag 440
Query: 241 atggttaatctaaattaaaaatggaaggtgcataaagatggccagccatttcaggaaatg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggttaaactaaattaaaaatggaaggtgcataaagatggccagccatttcaggaaatg 500
Query: 301 gttccatttgagggtgatgtgtgatttgaaagggatatctggagtccttcgggattgctt 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttccatttgagggtgatatgtgatttgaaagggatatctggagtccttcgggattgctt 560
Query: 361 ccagtatgggatttcatttttaaagtttattttgcacgctttcaatgggcactgccaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtatgggatttcatttttaaagtttattttgcacgctttcaatgggcactgccaatt 620
Query: 421 tggggagtggaaaagaaggctcagctctgcgatgcactaagcatattttctgtaacttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggggagtggaaaagaaggctcagctctgcgatgcactaagcatattttctgtaacttaa 680
Query: 481 ta 482
||
Sbjct: 681 ta 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
