BAC Information

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BAC

Clone NameMSMg01-474M14
Chromosome16 (Build37)
Map Location 84,699,884 - 84,700,382
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634
Downstream geneMrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474M14.T7 (MSMg01no474_m14.b1)MSMg01-474M14.TJ (MSMg01no474_m14.g1)
ACCAG556765AG556766
length1,912728
length of high quality
(start - end)
---500 (73 - 572)
definitionCHROMAT_FILE: MSMg01no474_m14.b1 PHD_FILE: MSMg01no474_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:21 2005CHROMAT_FILE: MSMg01no474_m14.g1 PHD_FILE: MSMg01no474_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCATGGTGATGAGCTGGTAGACTGGCGAAGGGGGTCGCTATTGTGNGGT
GCGTGCTGGTCTCATTTATCTCTTCCTTCCCTCAGCNGCNCTGCCTCTCT
TCTTGGTGCAACATCCNATTAAATTTGTATGCCTTACGTCTCTACTACAG
CGATGACACAACATATAAATCATCACCATCGTGCCTGTATCAATAGATAC
TGAGGACATAGTACTTCACGCTACCACNAACATTCTGACCATGAGCGTAT
AGCTACTCTACTTGCGTCAGCGCCTTTCTNATCGCATCTCGCGGTCCGGC
GTCCATGCGCGCTGCGTGCTCTGCCTTGTACTGTGTCGTTGCGATGCTAA
CACTAGCACTCTCGTANCGAGCGCATGAGACCCATCACATAGAGTGAATG
AGGGAGACGGGGTNGCAAGAGAGGTATGCATACACGATAGTCGTAGGTGA
GCACGAGTTAGTGACGCCTCGGCGGAACTGATGTCTCGTGCGGATGTAAT
GATCACGACGGACTGTTATCTGTGCGTGACTTAGTTGGTCGCTACGCGAC
GTTGTATGCATGACAGAGGGACGAGCGCATATACTCGGACATCGAAAAGA
TAAGGTACGTGANAGTATGGAGTAGAGATAGTTATGTAGNATGACTAGAC
GATGCACCTATTCACGAGGACCTATGAACGTACTATTATACACTAGAGTA
TAACACAGCAGTGTATGACGTCTGACTAGTCTGCTCCGGCTCTCACGTAT
CGATGCGCTGCGCGCATCTCTCTATCATAGTTAATACTACTCTACATACA
TAGTATACAAGCNCGTATCTTATAGATGCTACCATAATATCATTGAGTCA
CACCTACTCATTAATATATCTACACTATCTCNTCTTCACACCCTACGCTA
CAGCCATATGTGCGCACTCACACATGACGACGCACTCTACTAGTGCACGA
GTAGTGAGCAACTATCGCTACGTCTCGATCANTAATATCGTTAGCGATAC
CACGCGCGACAACCTACTATCCTATGCTACCACATATACAGCGCGAGTAC
GTCGCACTACTAATACGTCTAGTGATATATGTGCTGACACTGTNTCACGT
AGCGCGATGATTTGTGCGATGTCGCTGAGGACTGCGACCAGAGCTATTCG
TCGAGTNGCCTACTAGGTANTGCATTGCGNTNCTACTNGATCGATCGCNG
TCTTAGTGACGCTGGCTACTAGCGCTATGCGACGTTCGATCTCTGGCTAT
GAGCGGCTGTGTAGCACGTCGTACGTAGATATAAGAGAGTTACGCTAGTA
AGCAAGCGCGTCTACGCAGCGCGACGACGCGCGCGTANTATNATGCTACG
TGCGCGTGCTGTGCCGCTCAGTAGCAGTAGCGTATACCGCACATATAGTA
CGNTNGTCNATGATCGTTTACTGCTCTCGTGATATTATTCAGAGTCGCGN
GCTGATGAGTGATCGCTGAGACAGACAGGCGCGCGGTGAGNCGNATTCGG
CACTCTAGCGAGTAGCGTAATTATTGATACTAACGTCGCTGTGTAGCAGT
CGTGACGTGNGCGTGTCACNCGAGTGTTGATANGTAGCGCGAGAGACGGC
TCACGNGGAAGTGACGCGATACTANATCGCCATCGCCTATGATAGCATAC
GTANGCTAGCACAGTCATCTTTGCTATCTGATGCTAANTCNGNTCGCGAG
TTATATAAACAAGTGATGACCANTNCTGACAATATCACANCGCCGTAGTG
ACTATATCGCTNTAGCCCGTAGNATGACTAGTAGTCGTATAGAACTCACA
GCNTGTGTCATGCTCCTATGTACGACTGCGCGTCGACGTCGTGATCATCA
TAGTGTCGCCGTGTANCTATATCGTCNTACTGCTGATGCGACATGTACGC
TCNCNATGANTN
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGCGGACTTCAACTATCAGATGGACAGAAACAGGCAT
GGGAGATAGAAGACCAATCCTTTATCCTCTGAAGGCACCCCAGAATATAA
GGGGGGTCACAGACTACTCTAAGCCAGTAACCCATTTACAAAAGAAATGA
GGGTGAAAAAAAAATAATAAAACTGTAAACTTCAGACTTTGGGTATCGAA
TATGTTACAAGCAGTGAAAGCAGGAAAATTAAATTATGATAGGAGAATAA
ACACAATGCTTTGTCTCGTACTAATCAAATGGACACCGTTAAGTCTGGAC
ATCTTATGAAGGCCACACATTCAGCCTTAGGCATCAATTATGGTTGCTTC
ACTGATGGAGTCCAGAGGAAGCCATTCAGCCTGCTTCGTCGTGGGGGACA
GAGAGCATCTACAAGTTCACAGAATAATTAATAATATCCATGTTATTGTC
CAGCAGAGTTAACACTGAGTTTCCTTAAATGAACTGGCCAAGTCTGACAC
TCTGGTCTGTTTCTTCACCCGCCATCTNAAATGCATTATACACTCTGAGA
AATGTCCCTCTCATATCCTTTCCAAGAGCCAAGTTCCAACCTGGGTTTAT
TATTCACCCGGCCTGGGTTTCAGCACTTGGTTAAGCGTCCCGGATTCTTT
TTTATTTTTTCCCCATTTATATTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_m14.g1 MSMg01no474_m14.g1 CHROMAT_FILE:
MSMg01no474_m14.g1 PHD_FILE: MSMg01no474_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:21 2005
         (500 letters)



>mm_chr16_84699684_84700582
          Length = 899

 Score =  907 bits (469), Expect = 0.0
 Identities = 493/501 (98%), Gaps = 3/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactatcagatggacagaaacaggcatgggagatagaagaccaatcctttatcctctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactatcagatggacagaaacaggcatgggagatagaagaccaatcctttatcctctga 260

                                                                       
Query: 61  aggcaccccagaatataaggggggtcacagactactctaagccagtaacccatttacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aggcaccccagaatataaggggggtcacagactactctaagccagtaacccgtttacaaa 320

                                                                       
Query: 121 agaaatgagggtgaaaaaaaaataataaaactgtaaacttcagactttgggtatcgaata 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct: 321 agaaatgagggtgaaaaaaaa-taataaaactgtaaacttcagactttgggcatcgaaaa 379

                                                                       
Query: 181 tgttacaagcagtgaaagcaggaaaattaaattatgataggagaataaacacaatgcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttacaagcagtgaaagcaggaaaattaaattatgataggagaataaacacaatgcttt 439

                                                                       
Query: 241 gtctcgt-actaatcaaatggacaccgttaagtctggacatcttatgaaggccacacatt 299
           |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtct-gtgacaaatcaaatggacaccgttaagtctggacatcttatgaaggccacacatt 498

                                                                       
Query: 300 cagccttaggcatcaattatggttgcttcactgatggagtccagaggaagccattcagcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagccttaggcatcaattatggttgcttcactgatggagtccagaggaagccattcagcc 558

                                                                       
Query: 360 tgcttcgtcgtgggggacagagagcatctacaagttcacagaataattaataatatccat 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 tgcttcgtcgtgggggacagagagcatctgcaagttcacagaataattaataatatccat 618

                                                                       
Query: 420 gttattgtccagcagagttaacactgagtttccttaaatgaactggccaagtctgacact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttattgtccagcagagttaacactgagtttccttaaatgaactggccaagtctgacact 678

                                
Query: 480 ctggtctgtttcttcacccgc 500
           |||||||||||||||||||||
Sbjct: 679 ctggtctgtttcttcacccgc 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space:   435610
Effective search space used:   435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)