XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGACATCCGCGGAATTCAAAT
ACTATGGCCAAAAATAACTCATTTATCAAGCATTATAAAAGCATACTTAA
AACTCACAGGACCACTGTTTTCAAATATAGCCCAAATATCCAAATGAAAA
CACCTACTGACAAGTTGTCTTAGATACCATGGATCGGGTTTGTGCACTTA
GGCTTAGACTTTTCTACAGGACAATAAAATGATTCAGGAAACGATATTTA
TTTACCCTATGGTTATTGTTTCATAAGGTTTATTTCCTAGAAAGATTCCT
TCATTCTAAATATTATGTATTTGTTTCGTGTGTGCATTTTTATGACATAT
GTTCATATGTCATGAGCATGCTTTTGTGCATGTGAATGTAGTCATTCTAA
TGTCATGGCATGTATTTGAAGGTTAGAAGATAACCTTAGGCCCAACCTTG
CTTTCTCTCTACTTTGCTTTACAAAGTAAAGAGAGGTCTTTTTATTGTTT
TTCCATTGATTAGAGCAGGCTACCTGGTCCATGATCTTCCAGGAATTCTC
CTGTCTCAGCTGCCTATCTCTCCATAGGAGCACTAGCATCACAGATACTC
AGACTATACCCAGCCTTTACATGGGTTCTAGAGATTCACATTTAGATTCT
CATGCTGTGTAACAAGGTCTTTTGCCCCCCAAGCCTTCTTTTCCGGGTCA
TCATCTGAGGACTATTGAGAAATCTACTTTATTTAATTATCCCACTAACT
GATTCATT

NTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAATTCTTTAT
ATATATTGGATATTAGTCCTCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTCATTGACGGTGTCTTTTTCCTT
ACAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATTCTTATTCTTA
CAGCACAAGCCTTTGTTGTCTTATTCAGGAATTTTTCTCCTGTGCCAATA
TCTTCGAGGCTTTTACCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGAGCTCCTTGATCCACTTAGATTTGACCTTATTACAAGGAG
ATAGGAATGGATCAATTCGAATTCTTCCACATGATAACCATCAGTTGCGC
CAGTCCCACTTGTTGAAAATGCTGCCTTTTTCCCACTTGGACGTCTCCCC
CTCCCCTCTGTGAACATCTTGGGACCTCACTGTGTGCGGGCCTTCCCTTC
CGTCCTTTCCTTCACCTCCCCCTCCCTTTCTCCTTTTTTCCTCCCATTCT
CTCCTCTTTTTCCTCCCCTCTTTACCCCCTATATCCTCTCTATTTTACAC
TCCTTCTTCTTTTTTTCTCCCGCTTCCCCCTTTTTTTTTTCTTTTCCGCC
TCCGTCTCCCTCTCCATTCCTTTT

Query= MSMg01no475_b14.b1 MSMg01no475_b14.b1 CHROMAT_FILE:
MSMg01no475_b14.b1 PHD_FILE: MSMg01no475_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:46 2005
         (496 letters)



>mm_chr16_28560721_28561616
          Length = 896

 Score =  774 bits (400), Expect = 0.0
 Identities = 452/496 (91%), Gaps = 41/496 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataactcatttatcaagcattataaaagcatacttaaaactcacaggaccactgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaataactcatttatcaagcattataaaagcatacttaaaactcacaggaccactgtttt 491

                                                                       
Query: 61  caaatatagcccaaatatccaaatgaaaacacctactgacaagttgtcttagataccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caaatatagcccaaatatccaaatgaaaacacctactgacaagttgtcttagataccatg 431

                                                                       
Query: 121 gatcgggtttgtgcacttaggcttagacttttctacaggacaataaaatgattcaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gatcgggtttgtgcacttaggcttagacttttctacaggacaataaaatgattcaggaaa 371

                                                                       
Query: 181 cgatatttatttaccctatggttattgtttcataaggtttatttcctagaaagattcctt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgatatttatttaccctatggttattgtttcataaggtttatttcctagaaagattcctt 311

                                                                       
Query: 241 cattctaaatattatgtatttgtttcgtgtgtgcatttttatgacatatgttcatatgtc 300
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cattctaaatattaagtagttgtttcgtgtgtgcatttttatgacatatgttcatatgtc 251

                                                                       
Query: 301 atgagcatgcttttgtgcatgtgaatgtagtcattctaatgtcatggcatgtatttgaag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 250 atgagcatgcttttgtgcatgtgaatgtagtcattctaatgtcatggca----------- 202

                                                                       
Query: 361 gttagaagataaccttaggcccaaccttgctttctctctactttgctttacaaagtaaag 420
                                         ||||||||||||||||||||||||||||||
Sbjct: 201 ------------------------------tttctctctactttgctttacaaagtaaag 172

                                                                       
Query: 421 agaggtctttttattgtttttccattgattagagcaggctacctggtccatgatcttcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 agaggtctttttattgtttttccattgattagagcaggctacctggtccatgatcttcca 112

                           
Query: 481 ggaattctcctgtctc 496
           ||||||||||||||||
Sbjct: 111 ggaattctcctgtctc 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)