BAC Information

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BAC

Clone NameMSMg01-475H07
Chromosome16 (Build37)
Map Location 51,017,568 - 51,017,986
singlet/doubletsinglet
Overlap genenone
Upstream geneEG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H07.T7 (MSMg01no475_h07.b1)MSMg01-475H07.TJ (MSMg01no475_h07.g1)
ACCAG557278AG557279
length760758
length of high quality
(start - end)
419 (74 - 492)295 (81 - 375)
definitionCHROMAT_FILE: MSMg01no475_h07.b1 PHD_FILE: MSMg01no475_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:14 2005CHROMAT_FILE: MSMg01no475_h07.g1 PHD_FILE: MSMg01no475_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGTTCTATAATTTGCGTGCGCTAAACGACTCCTATTTTCAGAACATC
CGCGGAATCTCCTGCTTCACTCTCTCCTTTGTCTCTCTACATATTTTGTT
TCCCCTTCCTTGAGAGAACCTTCCCACCCTTCTATTTCCCTACTTTATAC
CTATTCTCTATAGTTATAGAGACCGTAGTGTACTTATCAAAGGTAATGTA
CACAGGTAAAGTAACACATACCACATTTTTTTTTGCTCTGATTTACCTCA
CACAGGATAATTTATCTGTAAATCTCACAATTTCTTCTTTAAACAACACC
TGAATAATTCATATTGTGGACATGCTTCTTATATTTTTAAAGTATTCATC
TGCTAGTGGATATATTTGTTTGATATTTTTGGCTATTATGAGCAGAATAA
AGATGAACATAGATGAGCAAGTATCTCTGTAGTAGGATGAACATCCTATG
TATGTGAATATGACCAAGAGTGGTATAGCTAGATCTTGAGGTAGAGCTAT
TACCAGCGGCTTGAGGAACTGCTACACTGATTTCCATAGTTGTACAAATT
TGTACATCCTACCACCCATGGATGAGTGCTCCCTACTTTGAATCCTTGAC
AACATGAACTGTATTCTCCTTTATTTGACCCTGGTCATTCTGAACGGCGT
AATACGACATCCCCTAGTATCTCTTTTTTGCTTTTTCCCCGATTACTCCC
GACTTTGTTCTTTTTTTTTTACCGTTTCTTACCCCTCTTTTTACCCCCTT
GCATTACTCG
CCCTCTCCATGCTACGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAA
GGCTTGTTTACTAGTTAGGCACAGTGGAGGCCCGCGCCATCTTATAATGG
CGATTGCTCACGGCACACACGGCTCTCCTCAGAGATTACTGGCGGCACAC
ATGCGATTGCTCGCAGCACTTACCGGCTTTCCACAGTCAAAGATCAAGTG
ACCATAGGTGTGCGGGTTCATTTCTGGGTCTTCAATTCTATTCCATAGGT
CTATTTGTCTATCAATATACCATTACCATGCCGGTTTTATCACAATTGCT
CTGTAGCACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTT
ATCCTTGACAAGAGTTTTTGCTCAACTAGGCTCTTTGTTATTCCACATGA
ACTTGGAGATTGTCCTTTCCCACTCCGTGAATAACTGAGTCGGAACTTCG
CCGCTTATCTTACTTTTCGCCCCCCCTTTCTCCCCCCTCCTTTCCCCCTC
CCTTTTTTGCCTTTCCGCCCCCTCCTTTCCCCCTATCCCCCCCCTCCTCT
CCCCCCCTCCCTCCCCTTTCCCTTCCTTTCCCCCCCCCCTTTCCCCCTCA
TCTTCTCCTTTCTCTTCCCCCTTTCTCTCTCTTCCCCCCTTCCCTTCTCT
CTTTTTTCCCCCCTTCTCCCCTACCCCTTACTCCTCTCCCCCTTCTCCCT
CTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h07.b1 MSMg01no475_h07.b1 CHROMAT_FILE:
MSMg01no475_h07.b1 PHD_FILE: MSMg01no475_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:14 2005
         (419 letters)



>mm_chr16_51017368_51018186
          Length = 819

 Score =  764 bits (395), Expect = 0.0
 Identities = 413/419 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctttgtctctctacatattttgtttccccttccttgagagaaccttcccacccttct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctcctttgtctctctacatattttgtttccccttcctttagagaaccttcccacccttct 260

                                                                       
Query: 61  atttccctactttatacctattctctatagttatagagaccgtagtgtacttatcaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttccctactttatacctattctctatagttatagagaccgtagtgtacttatcaaagg 320

                                                                       
Query: 121 taatgtacacaggtaaagtaacacataccacatttttttttgctctgatttacctcacac 180
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 321 taatgtacacaggtaaagtaatacataccacatttttttttggtctgatttacctcacac 380

                                                                       
Query: 181 aggataatttatctgtaaatctcacaatttcttctttaaacaacacctgaataattcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggataatttatctgtaaatctcacaatttcttctttaaacaacacctgaataattcata 440

                                                                       
Query: 241 ttgtggacatgcttcttatatttttaaagtattcatctgctagtggatatatttgtttga 300
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtggacatgcatcacatatttttaaagtattcatctgctagtggatatatttgtttga 500

                                                                       
Query: 301 tatttttggctattatgagcagaataaagatgaacatagatgagcaagtatctctgtagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttttggctattatgagcagaataaagatgaacatagatgagcaagtatctctgtagt 560

                                                                      
Query: 361 aggatgaacatcctatgtatgtgaatatgaccaagagtggtatagctagatcttgaggt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggatgaacatcctatgtatgtgaatatgaccaagagtggtatagctagatcttgaggt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)