BAC Information

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BAC

Clone NameMSMg01-475J10
Chromosome16 (Build37)
Map Location 12,186,519 - 12,186,764
singlet/doubletsinglet
Overlap gene2700045P11Rik
Upstream geneLOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
Downstream geneEG622509, LOC622553, Ercc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J10.T7 (MSMg01no475_j10.b1)MSMg01-475J10.TJ (MSMg01no475_j10.g1)
ACCAG557380AG557381
length714784
length of high quality
(start - end)
248 (41 - 288)330 (80 - 409)
definitionCHROMAT_FILE: MSMg01no475_j10.b1 PHD_FILE: MSMg01no475_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005CHROMAT_FILE: MSMg01no475_j10.g1 PHD_FILE: MSMg01no475_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCAAAAATCCGCGGNAATCCAGAAAGTTACAAATACATTATAGAGT
GATTTATCATTTTCATTGTCATGTTACAGCACGCTAATTGGAATACACTG
AGCAGAAACTGAGGTCTTCCCTCCACCTACACATGCTGTTAAAGTTCATG
GCCACTGACTTCAATATATCTTCTCCCATAAAGCATAAAAATAGGAAGCA
AGTCCCCTCTGAAGAATTTCCTAACCTACCTGCTACTACATGCTAATGTG
CTTTTGATGGGTTCAAATGGTAAGATTTCTGCATCATANGTTAATTCCCC
CCTCAGTGAAATAATACAGTAGGAATATAGTGAAGGCAATAATGAGGAGG
TAATAAACGAATGAACCTGGGGTAAGCAGAGGCAGAAGCACTTTAGCCAG
ATGATGGTATTTGGCAAGAAGTGAGGACTGCACAGGAGAGGTTGAGCTAC
TACAGTTGACTAATCCTTGGAATCCTGCAGACCACCACTGTATAAGCCAA
GTTTTGCATTGCTAGGATAAGAGATCTGACTAACTCCCAGGAATAAGATT
CACTCAGGTTTATATTTCAGAGAACCCCCTATGCTAAGTGCTAAATGGCC
TTAAATCGGCCACAAACACATCTCTTTTTTTTGTCTTGCCTCTCCTATTC
CACACAACCTCCCTTACCTCTTATCCCTTATTTTTGTTCTGATTTCCCCC
CTCACTTTTCGCTT
TTCTCTCGATGCAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATCTCTACCTCCCACTC
CACTGTGTGAGTATGAGGATTACAGATGTAAATATCACCATTTTTAGATT
TTAGATAGTTTAGGGGATTTGAACTCATGCCCTTAAGTTTGGATGGCAAG
CACTTTACCCCATTGAACTATCTTCTCAGCTTCCATCTCATTTTTGAGAC
AGGGTCTCTCACTGGCTTGAAGCTAGTCAAGTAGGCTATGCTGACTGGCA
ATGGAGCTTCAGAGATCTGTCTCCATACCACTATCCCTGCCTTAAACAAC
GTGGGCTCTGGAGCCTCAACATCAGTTCTCATGCACGAAAGGCAAGCACT
TTACCTACTGAACCATCATTCTAGCCTATAGAAGGGATGCATGGAGGCTG
GGCTTACAGATTACGAAAAGTACCCCGCTCTACTATGATGGCCCTTTTCT
CCTTCCACTCTGACTGGACTCCTCCCCCTTCCTCCCGCTTCCACCCCCGC
CCCTTTACCCTTCTTCCTCCTTCCCCTGTTCCTTACTCCCCTTCCCGTCC
TTTCCTTCCCCTCCCCCCCCCCTTTCTCTCTTTCTTCCTCCCCTTCCCTC
CCCCCTTTTCCTCCCCCTTTTTCTCCTTTTTCTCTCTCTTATCCTCCCCT
ACCTCCTTCTCTTTTTTTCCCCTCTCTTCCCCCCTTTATTTTTCACTATT
TCCCCTCTCCTTTTCCACACACTCTCTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j10.b1 MSMg01no475_j10.b1 CHROMAT_FILE:
MSMg01no475_j10.b1 PHD_FILE: MSMg01no475_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:25 2005
         (248 letters)



>mm_chr16_12186319_12186966
          Length = 648

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatagagtgatttatcattttcattgtcatgttacagcacgctaattggaatacactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attatagagtgatttatcattttcattgtcatgttacagcacgctaattggaatacactg 387

                                                                       
Query: 61  agcagaaactgaggtcttccctccacctacacatgctgttaaagttcatggccactgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agcagaaactgaggtcttccctccacctacacatgctgttaaagttcatggccactgact 327

                                                                       
Query: 121 tcaatatatcttctcccataaagcataaaaataggaagcaagtcccctctgaagaatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaatatatcttctcccataaagcataaaaataggaagcaagtcccctctgaagaatttc 267

                                                                       
Query: 181 ctaacctacctgctactacatgctaatgtgcttttgatgggttcaaatggtaagatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctaacctacctgctactacatgctaatgtgcttttgatgggttcaaatggtaagatttct 207

                 
Query: 241 gcatca 246
           ||||||
Sbjct: 206 gcatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)