BAC Information

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BAC

Clone NameMSMg01-476E14
Chromosome16 (Build37)
Map Location 67,008,365 - 67,008,754
singlet/doubletsinglet
Overlap geneCadm2
Upstream geneLOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E14.T7 (MSMg01no476_e14.b1)MSMg01-476E14.TJ (MSMg01no476_e14.g1)
ACCAG557914AG557915
length7471,411
length of high quality
(start - end)
399 (69 - 467)---
definitionCHROMAT_FILE: MSMg01no476_e14.b1 PHD_FILE: MSMg01no476_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:21 2005CHROMAT_FILE: MSMg01no476_e14.g1 PHD_FILE: MSMg01no476_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTAGGTCTACATGTCACCANNNCGACNCACNATCCAAAGAGGATCCGCG
GAATTCTTTAATGCCCAAACACTTGAAACTTACCTTACATATATCACTTA
CAAAAAAAAAAACAAAAACTAAAACAAAAACTCATGCAACTAAAAAGTAA
TTATAATTCCAATCCAGATCCCGTTTTCTGATAAGTTAAGGCTGTCTTGT
CAAATTACTGCAAGACATAATTATAATCAGATCTTGTTAAAAATTATGGG
TGATCTTCTTTCTTGAAGTTTCCTAGTCAATGAATATAAAATGGAGTTCA
ATGACTTACATTTATAATAGTTTACCACGTTGGGACCTTGTATCTACTCA
AAAGACCCCCACTTAAACTCTTTTCTGAGTCTATTTTCGTCTTTACTCAC
ATGGCTTCTTCATTTAGTTTTCAGAGTAGCTGGTCCTCTTCCATGTAGTT
TCAGGATCTACTCGTCCTATTCTCATAGATGCTACAGTTGAAATATCTGC
CTCCAATGCGTCTTTAACACCTTTTGAGTCACTGAAATATGCTAAAATAT
CTCACAAACACACTATTATAGCTTGTACAATAATAAGTGAAAGGTACATT
TGCCAGTCCTAAAATTCAGTTGCTCACTTGACCCTTTTATGCGTGTGGTT
TATTCGACTTCTTCCCATATGATGAAGACTTTCTTTATCTTTCCAAAATC
TTCGAATTTATTTTGTCACCATAAAACCTTTTAGATTTTTTACCGAT
GAAACAACCCCATTAACCAGAAACAAGAAAGAANAAAAAANGGNNNAGGG
CGTACAAAAAAAAAAGGAGGGGGGGGNGAANNGNNNNANNGNNNANCGTT
CAACCCCAACAAAAAGGGGAGGGNGAGAGAAAAGGAAAACAGAGAGGACG
AGAGGAGAGAAAAGAAAAACAAGGACCACAGACCGCATGTTAGACACACA
CCGAGACGACGAACNCCCGACACCCGAGCGCCCGTGCCAGCGNCCCGACC
ACGAAAGCAGCCGACCCGACTACCGGCGAGTGGAGCGGCGAAACACACCT
ATTACCACGCCGGACGACCGCGCCCGCGCGTCCGAGCCCCGGTGCCACAG
ACCCATACGCGCACACCCGCGCCAGACTATCTCCCAAAAACACACATAAG
GAGCACCCGCGCGCGCCCCCGCCCACACCTATACATTCGCGCCCAAGGTG
CGGTCCCGCGGAAAGAAGAATACCATACCCGCAATCACACACGAGCGAAC
CAGAACGCACAACACTAAGAACGCAACAGACAGACCCCGCAGCAAAAACC
TCGTTTATTATATATCAACACACGCAGTACCGCAAGAAGAAGCATCACGC
TAACCGTATACCAAACCCACCGCGAAATATATTAATCGTAACATAACCCA
CATACCTCCACGAAAGAAACCGCCGGATACACGACCACAACACCACGCGG
CAACCGGATACAGACACACCCCGCACTACAATCAAAACCGCGACAATAAC
CCGGCTATATCAATAACACAACCACAGAAAATACGCGCGCGGACAAACAC
CGAGACACAGAATTACACAAAGCGCATACATAACACCCGGCGAAAGTAAC
ACACACGCAGTCGCTCCCCGCCCTTGACCCAATCANTACCGCCACAACCA
TTCGTGCCCACGAGCACACCCACCACTCGGGCATACTCAAACACCTAGCA
ATAGACACAGAGCACCACGCGATGTCCCACACCACAGCCGACGACCNTAT
TACTCTCCGCCGTATATGCCGCACCCCCGCCCACCGCTCATACACCACCC
GGANGTATTTAGCCGACACACTATATTTCTATTTACCTNCGCCCCCGCAC
TATCTCGCAACGCCGTGTATGCGCATAGACTCACCCCATCAACCACCGTC
CATAATATCCGCCGTGTTATAGACCGCGCCCCCGCGCCGCCACCCGCATC
CGGCGTATTATAACACCATACGAATTTATCACACCCTACATAACGCTATA
ACACATATATAATCCGGCTGATGCGTAATACATAAAACAACGACGCGCGG
CGTACACTCGTCTGTCCACGCGCGCCACCACGCCATCACACACCATCTAA
TATATCGCGCGCGACGCCGCGCCACACANTNATATGATCACGCCTCAGCA
GCGCTATCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e14.b1 MSMg01no476_e14.b1 CHROMAT_FILE:
MSMg01no476_e14.b1 PHD_FILE: MSMg01no476_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:21 2005
         (399 letters)



>mm_chr16_67008102_67008900
          Length = 799

 Score =  679 bits (351), Expect = 0.0
 Identities = 384/399 (96%), Gaps = 9/399 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacttgaaacttaccttacatatatcacttacaaaaaaaaaaacaaaaactaaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||   ||||||     | ||
Sbjct: 653 acacttgaaacttaccttacatatatcacttacaaaaaaaaa---aaaaac-----c-aa 603

                                                                       
Query: 61  aactcatgcaactaaaaagtaattataattccaatccagatcccgttttctgataagtta 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 602 aactcatgcaactaaaaagtaattataattccaatccaaatcccgttttctgataagtta 543

                                                                       
Query: 121 aggctgtcttgtcaaattactgcaagacataattataatcagatcttgttaaaaattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aggctgtcttgtcaaattactgcaagacataattataatcagatcttgttaaaaattatg 483

                                                                       
Query: 181 ggtgatcttctttcttgaagtttcctagtcaatgaatataaaatggagttcaatgactta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 482 ggtgatcttctttcttgaagtttcctagtcaatgaatataaaatgaagttcaatgactta 423

                                                                       
Query: 241 catttataatagtttaccacgttgggaccttgtatctactcaaaagacccccacttaaac 300
           ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 422 catttataacagtttaccacgttgggactttggatctactcaaaagacccccacttaaac 363

                                                                       
Query: 301 tcttttctgagtctattttcgtctttactcacatggcttcttcatttagttttcagagta 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 362 tcttttctgagtctattttcgtctttactcatatggcttcttcatttagttttcagagta 303

                                                  
Query: 361 gctggtcctcttccatgtagtttcaggatctactcgtcc 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctggtcctcttccatgtagtttcaggatctactcgtcc 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)