BAC Information

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BAC

Clone NameMSMg01-476P14
Chromosome16 (Build37)
Map Location 25,199,452 - 25,199,896
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream gene5430420C16Rik, Trp63, LOC100043571, Leprel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P14.T7 (MSMg01no476_p14.b1)MSMg01-476P14.TJ (MSMg01no476_p14.g1)
ACCAG558437AG558438
length750749
length of high quality
(start - end)
322 (325 - 646)437 (69 - 505)
definitionCHROMAT_FILE: MSMg01no476_p14.b1 PHD_FILE: MSMg01no476_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:16 2005CHROMAT_FILE: MSMg01no476_p14.g1 PHD_FILE: MSMg01no476_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTATACATCCGCNGGAA
TCCTGGAATTACAATGACACCTTCCCACAGGGAGCTCCAGCCAATGATTT
ATATTCACCCTGAAATCTCCTCCCCACTCTCCAAGGTTCATTCATTTATA
GCCTTTGGTCAACCCCAGTAAAGTGGATGTGCACAAGCTGTTCCTCTGAC
TAGCATCAGAGAAGGCCTTCATCTAAAAAACCTGTAACTAAAATCCTCGC
TTAAGATCCCATCATTCTCCACCTTGTGTGCCATGGCCTTTGAACCCAAG
AGGGGAAGTGGGACTTAAATCCATACCAATCCAGGCACAAAACCAATGAT
CTACCATGCTGTCCTGCCTGCAAAGTATGCTATGGCAATGATGACACAGA
TCTTGTGGGAGTACCCAACCAACCTCTGATTTGACTTAAGGCCTACTCCA
TGAGATAGAATCTGTACCCAATACTGCTTGGGTGACCAAGAACCAGAGAC
TAGAGGCCTAGTGTACAACCCAAAACAGTAAGTCTTAGGGGGAAAAGTGG
TAATAAAATGTCACGTAATGATATTCTTAGTCATCATCACAGGACTTCTT
CCTATGGAAGATGGGAACAAATATAGAAATCCACAGCCAGAGAGAGAATA
GGCTTTTTTATGTTGGAAGAGACCTTGGAACACTCAGTTCTAACTGGGAA
GTTATTTCAGAGAACACCACAGAACAGGAGTCACAAAGAGTATAAGACCT

CATGATAGTGGGAGGCCTGGGGGCCGCCTGTTTCACGAATTTAGGTGAAC
TATAGAAGTTTCGCGAAATTCTCCTTCGCTCTTGAAGTGAATTTAAGTTG
AGCCTGTGGAATTCCAGGCAGATTCCAATGGATACTGTAGAAGGAGATTA
ATTTACTTAGAAATAAAACCAAGTGGAACTGTAAAAATTTAATTTTACTA
ATGTCCTTGGGCAGATTTCTGATTGCGTTCATATGTGCTGTGTTATTTCC
AAAGCTTTTATCCTGCTCCTTCAAAAACCTCAGAACTCAACCTGTCCTTC
AAGACTTAGTCTTTTGTTTTTTTTAGGAGCCCTCACTGGCCCATCTCCAG
TTTGCTCTCCTTCTCCTCCCTCTACAGAACCATCAGGGAAAGACACTTCT
GTGCATTCTAGAGCAGCATGGGAAGTCTCAAGGGGAAGAGAAAGGGGAGC
TCGTGTGAGTACATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTNTTTTTTTTTNTNTTTTTTTTTTTTTTNTTNTTTTCTCCTTTTT
TTCTTTCCCTCTTCCTCTTTCTTCCTCTCCCCTTCCTTCCCTTTCTTCTC
TTTTTTTTTCCTTCTCCTTTTCCTCCCTTTTCTTTTTTCCCCCCTTTTTT
CTTTTTTTTTTTCCTTTTCTTTCCTTCCCTTTTCCTCTTTTTCCTCCCCT
TCTTTCTTTTTTTCCTCTCTTCTCCCCCCTTCTTTTCTTCTCTTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p14.g1 MSMg01no476_p14.g1 CHROMAT_FILE:
MSMg01no476_p14.g1 PHD_FILE: MSMg01no476_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:16 2005
         (437 letters)



>mm_chr16_25199299_25200136
          Length = 838

 Score =  741 bits (383), Expect = 0.0
 Identities = 427/449 (95%), Gaps = 17/449 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctccttcgctcttgaagtgaatttaagttgagcctgtggaattccaggcagattccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttctccttcgctcttgaagtgaatttaagttgagcctgtggaattccaggcagattccaa 539

                                                                       
Query: 61  tggatactgtagaaggagattaatttacttagaaataaaaccaagtggaactgtaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tggatactgtagaaggagattaatttacttagaaataaaaccaagtggaactgtaaaaat 479

                                                                       
Query: 121 ttaattttactaatgtccttgggcagatttctgattgcgttcatatgtgctgtgttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttaattttactaatgtccttgggcagatttctgattgcgttcatatgtgctgtgttattt 419

                                                                       
Query: 181 ccaaagcttttatcctgctccttcaaaaacctcagaactcaacctgtccttcaagactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccaaagcttttatcctgctccttcaaaaacctcagaactcaacctgtccttcaagactta 359

                                                                       
Query: 241 gtcttttgttttt----tttaggagccctcactggcccatctccagtttgctctccttct 296
           ||||||||    |    |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 358 gtcttttg----tccggtttaggagccctcactggcccatctccagtttgctccccttct 303

                                                                       
Query: 297 cctccctctacagaaccatcagggaaagacacttctgtgcattctagagcagcatgggaa 356
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 302 cctccctctacagaaccaccagggaaagacgcttctgtgcattctagagcagcatgggaa 243

                                                                       
Query: 357 gtctcaaggggaagagaaa-ggggagctcgtgtgagtacatc--tgtgtgtgtgtgtg-- 411
           ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||  
Sbjct: 242 gtctcaaggggaagagaaagggggagctcgtgtgagtacatctgtgtgtgtgtgtgtgca 183

                                        
Query: 412 tgtgtgtgtgtgtg----tgtgtgtgtgt 436
           ||||| ||||||||    ||| |||||||
Sbjct: 182 tgtgtctgtgtgtgagtatgtctgtgtgt 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space:   354812
Effective search space used:   354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)