BAC Information

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BAC

Clone NameMSMg01-477E06
Chromosome16 (Build37)
Map Location 59,540,192 - 59,540,527
singlet/doubletsinglet
Overlap geneBC043118
Upstream geneLOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina
Downstream geneLOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477E06.T7 (MSMg01no477_e06.b1)MSMg01-477E06.TJ (MSMg01no477_e06.g1)
ACCAG558657AG558658
length724739
length of high quality
(start - end)
634 (50 - 683)658 (82 - 739)
definitionCHROMAT_FILE: MSMg01no477_e06.b1 PHD_FILE: MSMg01no477_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:39 2005CHROMAT_FILE: MSMg01no477_e06.g1 PHD_FILE: MSMg01no477_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTGTACATTTGCCTTGTATCCCATAAGGTGTAAAAACATG
TGGAGCTTCCGGTACATAAAAGTTCAAAAACCAAATACTTCTTCTTGTAA
CACTGGCTGCTTTTTATAGTTTTTAAGATTTGCTGGGGCAGTGGTGGCGC
ATGCCTTTAATCCCAGCACTTGGGAGGCAGCAGCAGGCGGATTTCTGAGT
TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACA
CAGAGAAACCCTGTCTCAAAAAACCAAAATAAATAAATAAATAAATAAAG
ATTTGCTGAAGAAGAAGAGGCGTGAGGTGTTAAACTTAAGTGCAACCCTC
TCTGACCCTGGGAAGTGTCTGGAAACTCAAGTGTTCTGCAAACTGGACGC
TGTGTTCTATAAGGAGGTGGAATTATGAGTGGAGCGGGGACAGATGGACA
GCAGAAGAGAACTGTCACCACACAGTGCTCTATACTATTTTGCTCATTTT
ACTTTGCAAGTGACCTCTGCCCTAAATACACAGCTGTGATAACAGGGTCA
ATCTGTCCACACTTCATCTGTAGTCCTCGCTGTGGCCAATGAAATAATTG
GTATATAACTAAACCCTGAGATATTGGTGAATAAGTCCCTAGGCTTAAAT
ACATAAAACTAAATAAAAACTATA
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTTTTAAAACTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATA
ATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_e06.b1 MSMg01no477_e06.b1 CHROMAT_FILE:
MSMg01no477_e06.b1 PHD_FILE: MSMg01no477_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:39 2005
         (634 letters)



>mm_chr16_59539867_59540900
          Length = 1034

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 299 aagatttgctgaagaagaagaggcgtgaggtgttaaacttaagtgcaaccctctctgacc 358
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagatttgctgaaggagaagaggcgtgaggtgttaaacttaagtgcaaccctctctgacc 385

                                                                       
Query: 359 ctgggaagtgtctggaaactcaagtgttctgcaaactggacgctgtgttctataaggagg 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 ctgggaagtgtctggaaactcaagtgttctgcaaactggacgctgtgttctataagaagg 445

                                                                       
Query: 419 tggaattatgagtggagcggggacagatggacagcagaagagaactgtcaccacacagtg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggaattatgagtggagcggggacagatggacagcagaagagaactgtcaccacacagtg 505

                                                                       
Query: 479 ctctatactattttgctcattttactttgcaagtgacctctgccctaaatacacagctgt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctctatactattttgctcattttactttgcaagtgacctctgccctaaatacacagctgt 565

                                                                       
Query: 539 gataacagggtcaatctgtccacacttcatctgtagtcctcgctgtggccaatgaaataa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gataacagggtcaatctgtccacacttcatctgtagtcctcgctgtggccaatgaaataa 625

                                               
Query: 599 ttggtatataactaaaccctgagatattggtgaata 634
           ||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttggtatataactaaaccctgagatattggtgaata 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)