BAC Information

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BAC

Clone NameMSMg01-477G15
Chromosome16 (Build37)
Map Location 33,322,719 - 33,323,426
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4
Downstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G15.T7 (MSMg01no477_g15.b1)MSMg01-477G15.TJ (MSMg01no477_g15.g1)
ACCAG558771AG558772
length744770
length of high quality
(start - end)
456 (73 - 528)694 (72 - 765)
definitionCHROMAT_FILE: MSMg01no477_g15.b1 PHD_FILE: MSMg01no477_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:51 2005CHROMAT_FILE: MSMg01no477_g15.g1 PHD_FILE: MSMg01no477_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATCAATTATCGTTGGGTGCCATTTTGTTCCAGTAAAACTCT
CCATCCCAAATATGCCCCGGCAATGAAAAAACAACACAATTAATATGAAT
ACGTGCTGTGCACCTAGATTGGGCAGATCTACCACTACACTATCATCTTC
CACATCTATGAGACCCCTTAAAACTTGCGGTTTCTCCAGGCTATGTGCTC
CACTTTTCTTCTTCTTCCACCTCCTCTGTGTCCTCTCCCTCTTCCTTTTT
CTCCTTCTTTCCTCTCTCACTTTCCCTTTCCCCCTCTCCTCTCCTTTCCT
TTTCCCTTTTCTCTGCCCAATCACCATCTCTTCTTTATTTTACAAATTAA
GGTGGGAAGCAGGTTTACAGGAAATCACCTGAGTGCTGACTCATTCCTTG
ACCACAGCCACTTACAAGAGAATGGAATTAACACCAAATATAATTAGCCC
CAGGGCTAGCCGCAACAAGCCTTCCTCAGGGAGGGTGGTACCAGGTAGCA
GACAACTGTAGGACTAATGTAAGGGGCACAGCCAGCCGGGACTCACCTGA
GAAACTTCGGAAAGGCTTCCATGTGACACATCTAGAGCAAGGACTAGAGT
CGACAAGTGTGGGTATGCTAGAACTGGCAGTTAACCCATATTACTCTTGG
GTTGGCCTGGGTCTATGGCTGTGGTAATAGGCGAAGGAGGATTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACTGTTAGATCATAAGGTCCCTGAAGAC
AGAAGATGTATCGACCTTTTGGGTTTTGCTGTCATGAGCCGCAGCGCTGT
GCAATTATCACCAGATGATAAATAGCCACAGAGTCAGGGACCAGGTGTAT
AAGGGTGTGTACACTTCGTGTTGTTTAAGAACTAATTCTAAATAAAGCAC
AATTTTCTAGAAGAACTCTAGAGTTCAATGCCTGTTGGATTGGAGCCCAT
CACAATTAGTACAGAGACTATTTAGGAAGCTGTTCATCCGCTCAGGCAAG
GCCAGTGGACGAGCAGAGGATGCTGGCAGTGAGGTGCAGCTTTACTTATG
AAGACAAGTTTGTGTCTTTGCCTGTGTGTGTATGTGGATGCCTGTGGTTA
TTTGTGTATGTGTGCCTTGCCTGTGTGTATGCAAGTGCCTGTGTGTACTT
GTGTATGGTTGTGCCTCTGTGTGTATATGTGTGCCTTTGTATGTAAGTGT
CTGTGTGTGTATCCAAGTACACTTGTGTGTGTTTGTGCCTCTATGTGTGC
CTGTGCCTATTTGTGTATGTGTGCACTTATGTATATTTGTGCCTTTGTGT
GTGACTGTGTGTGTATATAGTTATTCTCTTTCTCTCTCTGTCTCTCTCTG
TCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTGTGTGTGNGTGTGTGTG
TGTGTGTGTGTGTGTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g15.g1 MSMg01no477_g15.g1 CHROMAT_FILE:
MSMg01no477_g15.g1 PHD_FILE: MSMg01no477_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:51 2005
         (694 letters)



>mm_chr16_33322519_33323612
          Length = 1094

 Score = 1251 bits (647), Expect = 0.0
 Identities = 687/708 (97%), Gaps = 14/708 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgttagatcataaggtccctgaagacagaagatgtatcgaccttttgggttttgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgttagatcataaggtccctgaagacagaagatgtatcgaccttttgggttttgctg 260

                                                                       
Query: 61  tcatgagccgcagcgctgtgcaattatcaccagatgataaatagccacagagtcagggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgagccgcagcgctgtgcaattatcaccagatgataaatagccacagagtcagggac 320

                                                                       
Query: 121 caggtgtataagggtgtgtacacttcgtgttgtttaagaactaattctaaataaagcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtgtataagggtgtgtacacttcgtgttgtttaagaactaattctaaataaagcaca 380

                                                                       
Query: 181 attttctagaagaactctagagttcaatgcctgttggattggagcccatcacaattagta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 attttctagaagaactctagagttcaatgcctgttggattggagcccatcgcaattagta 440

                                                                       
Query: 241 cagagactatttaggaagctgttcatccgctcaggcaaggccagtggacgagcagaggat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagaccatttaggaagctgttcatccgctcaggcaaggccagtggacgagcagaggat 500

                                                                       
Query: 301 gctggcagtgaggtgcagctttacttatgaagacaagtttgtgtctttgcctgtgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggcagtgaggtgcagctttacttatgaagacaagtttgtgtctttgcctgtgtgtgt 560

                                                                       
Query: 361 atgtggatgcctgtggttatttgtgtatgtgtgccttgcctgtgtgtatgcaagtgcctg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtggatacctgtggttatttgtgtatgtgtgccttgcctgtgtgtatgcaagtgcctg 620

                                                                       
Query: 421 tgtgtacttgtgtatggttgtgcctctgtgtgtatatgtgtgcctttgtatgtaagtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtacttgtgtatggttgtgcctctgtgtgtatatgtgtgcctttgtatgtaagtgtc 680

                                                                       
Query: 481 tgtgtgtgtatccaagtacacttgtgtgtgtttgtgcctctatgtgtgcctgtgcctatt 540
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 tgtgtgtgtatccaagtgcacttgtgtgtgtttgtgcctctatgtgtgcctgtggctatt 740

                                                                       
Query: 541 tgtgtatgtgtgcacttatgtatatttgtgcctttgtgtgtgactgtgtgtgtatatagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtatgtgtgcacttatgtatatttgtgcctttgtgtgtgactgtgtgtgtatatagt 800

                                                                       
Query: 601 tattctctttctctctctgtctctctctgt--ctctctct--------ctctgtctctct 650
           |||||||||||||||| |||||||||||||  ||||||||        ||||||||||||
Sbjct: 801 tattctctttctctctgtgtctctctctgtgtctctctctgtctctctctctgtctctct 860

                                                           
Query: 651 ----ctctctctctctgtgtgtgngtgtgtgtgtgtgtgtgtgtgtgt 694
               ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 861 gtctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)