BAC Information

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BAC

Clone NameMSMg01-477G24
Chromosome16 (Build37)
Map Location 88,825,978 - 88,826,566
singlet/doubletsinglet
Overlap geneKrtap14
Upstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik
Downstream geneKrtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G24.T7 (MSMg01no477_g24.b1)MSMg01-477G24.TJ (MSMg01no477_g24.g1)
ACCAG558789AG558790
length749763
length of high quality
(start - end)
386 (290 - 675)589 (75 - 663)
definitionCHROMAT_FILE: MSMg01no477_g24.b1 PHD_FILE: MSMg01no477_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:52 2005CHROMAT_FILE: MSMg01no477_g24.g1 PHD_FILE: MSMg01no477_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAATCTACGGTCGCTGTACGACTCACTATAGGGTTACGATACGCGGAAT
TCTTTGTTTATTTCTCAGCCGCATTTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTGAAGATAGGTAAAGATCCTTTCCCAATCTGTGAGTGGCCTTGTT
GACTTATTGATGGTGTCTTTTGCCGTACAGAAGCTTTGGAATTTGATGAG
GTCCCATTTGTTGATTCTTGATCTTACAGCACAAGGCATTGCTGTTCTAT
TCAGGAATTTTTCCGCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTCT
CTCCTCTATAAGTTTCACTGGCTCTGGTTTTATGTGGAGTTCCTTGATAC
ACTTAGATTTGACCTTAGTACAAGGAGAGAGGAGTCAATTCGCGCTCTTC
TACATGATAATTGCCAGTTGTGACAGCACCATTTGTTGAAAATGCTGTCG
TTTTTCCACTAGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG
TACAGCTTTAGGTCAGGCATGGTGATTCCCCCAGAAGGTCTTTTATCTAT
CTTTTGCTATCCTAGGTTTTTTGTTNATTAAGATGAATTTGCAGATTGC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCGCAGACATCACTGCTCTAT
CCAGTTGTGAAACCACACAAAAAGTAAATATGCGTGACTAGGATGGTATT
CTCAATTCAATTAAAGCCGCGGGTAAATTGTGTTCATGCGCCATGGGGAT
GACGCACCCAAGGACAGGGGTATATAAGTGCTTTGCGTCTAAGAAGGGCT
ATTCCAACTCTGAACATTCTCCTTATCCCATCCTCAAACTCCTAGCTCCT
CTCAACATGTCCTGCAACAGCTGCTCTGGAACTTTCTCCCAGTCCTTTGG
GGGCCAACTGCAGTATCCGATCTCTTCATGCGGTTCCTCCTACCCCAACA
AAGTCTTCTACAGCACTGACCTCCAAACTCCCATCACCCACCAGCTGGGC
TCTTCTCTTCACAGTGGGTGCCAGGAAACCTTCTGTGAGCCCACCAACTG
CCAGACAGCCTATGTGGTCTCCAGACCCTGCCAGAGGCCTTTCTACAGTC
AGAGGATCCGAGGGCCCTGCAGGCCCTGCCAGTCAACTTTCTCGGGATCC
CTGGGATTTGGTTCCAGGGGTTTCCAGTCTTTTGGCTGTGGCTACCCATC
CCAGGGCTTTGGATCCCATGGTTTCCAGTCAGTGGGATGTGGTACCCCTA
CTTTCTCATCCTAAATTGTGGATTCAGCTTTTAACGTCCAACCTGCTTCT
CTACCAAAGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g24.g1 MSMg01no477_g24.g1 CHROMAT_FILE:
MSMg01no477_g24.g1 PHD_FILE: MSMg01no477_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:52 2005
         (589 letters)



>mm_chr16_88825778_88826766
          Length = 989

 Score = 1116 bits (577), Expect = 0.0
 Identities = 586/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggccgcagacatcactgctctatccagttgtgaaaccacacaaaaagtaaatatgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cagggccgcagacatcactgctctatccagttgtgaaaccacacaaaaagtaaatatgcg 730

                                                                       
Query: 61  tgactaggatggtattctcaattcaattaaagccgcgggtaaattgtgttcatgcgccat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 729 tgactaggatggtattctcaattcaattaaagccgcgggtaaattgtgttcatgtgccat 670

                                                                       
Query: 121 ggggatgacgcacccaaggacaggggtatataagtgctttgcgtctaagaagggctattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggggatgacgcacccaaggacaggggtatataagtgctttgcgtctaagaagggctattc 610

                                                                       
Query: 181 caactctgaacattctccttatcccatcctcaaactcctagctcctctcaacatgtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 caactctgaacattctccttatcccatcctcaaactcctagctcctctcaacatgtcctg 550

                                                                       
Query: 241 caacagctgctctggaactttctcccagtcctttgggggccaactgcagtatccgatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caacagctgctctggaactttctcccagtcctttgggggccaactgcagtatccgatctc 490

                                                                       
Query: 301 ttcatgcggttcctcctaccccaacaaagtcttctacagcactgacctccaaactcccat 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 489 ttcatgcggttcctcctaccccaacaacgtcttctacagcactgacctccaaactcccat 430

                                                                       
Query: 361 cacccaccagctgggctcttctcttcacagtgggtgccaggaaaccttctgtgagcccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cacccaccagctgggctcttctcttcacagtgggtgccaggaaaccttctgtgagcccac 370

                                                                       
Query: 421 caactgccagacagcctatgtggtctccagaccctgccagaggcctttctacagtcagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caactgccagacagcctatgtggtctccagaccctgccagaggcctttctacagtcagag 310

                                                                       
Query: 481 gatccgagggccctgcaggccctgccagtcaactttctcgggatccctgggatttggttc 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gattcgagggccctgcaggccctgccagtcaactttctcgggatccctgggatttggttc 250

                                                            
Query: 541 caggggtttccagtcttttggctgtggctacccatcccagggctttgga 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caggggtttccagtcttttggctgtggctacccatcccagggctttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)