Query= MSMg01no477_i19.b1 MSMg01no477_i19.b1 CHROMAT_FILE:
MSMg01no477_i19.b1 PHD_FILE: MSMg01no477_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:01 2005
(187 letters)
>mm_chr16_78149341_78149927
Length = 587
Score = 288 bits (149), Expect = 1e-82
Identities = 158/161 (98%)
Strand = Plus / Plus
Query: 5 gaattctaataactcatttcatatctgaaccttttcctgagagtcttggaaactatgaag 64
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctaataactcattccatatctgaaccttttcctgagaatcttggaaactatgaag 264
Query: 65 acagtgttatggtttctgtttggtgagctttgcaaaatttaaactgagtaggtagcgtgt 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 acagtgttatggtttctgtttggtgagctttgcaaaatctaaactgagtaggtagcgtgt 324
Query: 125 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 165
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no477_i19.g1 MSMg01no477_i19.g1 CHROMAT_FILE:
MSMg01no477_i19.g1 PHD_FILE: MSMg01no477_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:01 2005
(652 letters)
>mm_chr16_78290996_78292047
Length = 1052
Score = 723 bits (374), Expect = 0.0
Identities = 437/490 (89%), Gaps = 51/490 (10%)
Strand = Plus / Minus
Query: 1 aaagattctcatggcactgaactgtatacttgcaagagtaaaaaaaaaaaaaatctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 aaagattctcatggcactgaactgtatacttgcaagagtaaaaaaaaaaaaaatctgtgt 889
Query: 61 tgcgcatatttatcatcactgaacagttaaaaaaacccacttaaaccccttaaataattc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 888 tgcgcatatttatcatcactgaacagtt-aaaaaacccacttaaaccccttaaataattc 830
Query: 121 atactaagttccccagatgagtttaaaaattttaaaaagcatgaaatacaggaaaaaagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 829 atactaagttccccagatgagtttaaaaattttaaaaagcatgaaatacagg-aaaaagg 771
Query: 181 aagcagatctgtacaaacacacaaaaatgagatacacaaagacattgatttagtcatgca 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 770 aagcagatctgtacaaacacacaaaaataagatacacaaagacattgatttagtcatgca 711
Query: 241 attatttcaaatggtatgtgtattttacatgtatgtatgca------------------- 281
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 710 attatttcaaatggtatgtgtattttacatgtatatatgcatgtgtgtaatatatatata 651
Query: 282 ------------------------------tgtttaaatgtatatttcttttctgtgttt 311
||||||||||||||||||||||||||||||
Sbjct: 650 tatatatatatgtatatatatatatataactgtttaaatgtatatttcttttctgtgttt 591
Query: 312 aaaaagacagaagagataattggccatatacagatggaaaataagaaaccaactatccta 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaaaagacagaagagataattggccatatacagatggaaaataagaaaccaactatccta 531
Query: 372 gatgtaaaacaagaattaaatatgtacaaataaaaatgtaacctaaatgaaaactcacat 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gatgtaaaacaagaattaaatatgtacaaataaaaatgtaacctaaatgaaaactcacat 471
Query: 432 aacaattttg 441
||||||||||
Sbjct: 470 aacaattttg 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
