BAC Information

Click to search

BAC

Clone NameMSMg01-478C01
Chromosome16 (Build37)
Map Location 57,567,646 - 57,568,149
singlet/doubletsinglet
Overlap gene2610528E23Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 4631422O05Rik
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478C01.T7 (MSMg01no478_c01.b1)MSMg01-478C01.TJ (MSMg01no478_c01.g1)
ACCAG559316AG559317
length738735
length of high quality
(start - end)
665 (63 - 727)601 (66 - 666)
definitionCHROMAT_FILE: MSMg01no478_c01.b1 PHD_FILE: MSMg01no478_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:46 2005CHROMAT_FILE: MSMg01no478_c01.g1 PHD_FILE: MSMg01no478_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGAATTCCTCTTT
TACGACTCAAACACACTACTTTTCTTCATTTAAAATTATTGTAACAGGAA
GACATGCAGAATATATGCTCTTTCCCATGCACTTGGCTACCTCTGTAGGA
TTGTACATTTAACTTGTGAGTCTCTTAATTATACTGGGAATGGGCTAATT
ATAGATGATATAATTGCAGCGCTGTGGTATGGTGCAGAATCTAAAATAGA
ATGGAATTACTGAAAAGTAAAAGGACTAACAACTTGAAAATATAAATATG
TGCTTTTTATTTATAGCCTGTAGAGTTCATAATATGTCAATAAGCCTGCT
TAAGCCAGCCTGCCTGCCTATCTATCCATCCATCCATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCATATCAATAAGCCT
GCTTAAGCCAGCCTGCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCATATCAATAAGCCTGCTTAAGCCAGCCTGCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCTATCCATCTA
TCTATCATATCATATCAATAAGCCTGCTTAAGCCAGCCTGCCTGCCCATT
CATCCATCCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCC
ATCCATCTATCTGTGTGTCTTGTANTTGTGCTGAGGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTTGATGTCCTGAGACAATCATACTGGCGTTTT
GGTACAAGTATTGCATAATTGTATGAAGAAGAATGGTATGTGTTCATGTA
TGTGTGTCTTTGTATGCACATGCATGTAGAAGCTGGAGGTCCATATTTGG
TGTCTTCCTTGACGTCTCTACCACTGACTCTTTTTTGATAAAGAGCCTCT
CAATGAACCCAGAAACATCAGTGTGGTCAAGATGGCTATCTAGTGAGGTG
CAGGGATCATCTTGTCCCAACCTTGTCCCTACCACCCTCTCCAGTGCCGC
AATTACAGAGATGTGTCACCGAGGCTAGCTTTTCTGTGGGTGCTGGGGTA
TGGACTCAGACCCTCATGTATGGCAGGACCTACATCTCTCCAACCCTGAG
CTTGGTGGGTTTTGTTTGTTTGTTTGTTTTGTTGTTGTTGTTTGTTTGTT
TTTTTCAAGACAGGGTTTCTCTGTATAGTCCAGGCTGTCCTGGAACTCAC
TTTGTAGACCAGGCTGGCCTTGGACACAGAAATTCACCTGCCTCTGCCTC
CCGAGTGCTGGGAATTAAAGGCGTGCGCCACCACGCCCGGCCACCACTGA
GATTTCTTATTTCAAAAGAGATAGAGTATGCTTCTGATCAACAATCTCTA
CTTCTTAGACAACCAGGTCTTTTCATAGAATTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_c01.b1 MSMg01no478_c01.b1 CHROMAT_FILE:
MSMg01no478_c01.b1 PHD_FILE: MSMg01no478_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:46 2005
         (665 letters)



>mm_chr16_57567646_57568709
          Length = 1064

 Score =  775 bits (401), Expect = 0.0
 Identities = 464/507 (91%), Gaps = 42/507 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   acactacttttcttcatttaaaattattgtaacaggaagacatgcagaatatatgctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acactacttttcttcatttaaaattattgtaacaggaagacatgcagaatatatgctctt 445

                                                                       
Query: 61  tcccatgcacttggctacctctgtaggattgtacatttaacttgtgagtctcttaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcccatgcacttggctacctctgtaggattgtacatttaacttgtgagtctcttaattat 385

                                                                       
Query: 121 actgggaatgggctaattatagatgatataattgcagcgctgtggtatggtgcagaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 actgggaatgggctaattatagatgatataattgcagcgctgtggtatggtgcagaagct 325

                                                                       
Query: 181 aaaatagaatggaattactgaaaagtaaaaggactaacaacttgaaaatataaatatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaatagaatggaattactgaaaagtaaaaggactaacaacttgaaaatataaatatgtg 265

                                                                       
Query: 241 ctttttatttat--agcctgtagagttcataatatgtcaataagcctgcttaagccagcc 298
           |||||||   ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttttta---atcaagcctgtagagttcataatatgtcaataagcctgcttaagccagcc 208

                                                                       
Query: 299 tgcctgcctatctatccatcc--------------------atccatctatct----atc 334
           |||||||||||||||||||||                    ||||||||||||    |||
Sbjct: 207 tgcctgcctatctatccatccatctatctatctatctatctatccatctatctatccatc 148

                                                                       
Query: 335 tatctatctatctatctatc--t--atctatctatctatctatcatatcaataagcctgc 390
           ||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||
Sbjct: 147 tatctatctatctatctatccatccatctatctatctatctatcatatcaataagcctgc 88

                                                                       
Query: 391 ttaagccagcctg-----ctatctatc--t--atctatctatctatctatctatctatct 441
           |||||||||||||     |||||||||  |  ||||||||||||||||||||||||||||
Sbjct: 87  ttaagccagcctgcctgcctatctatccatccatctatctatctatctatctatctatct 28

                                      
Query: 442 atctatctatctatcatatcaataagc 468
           |||||||||||||||||||||||||||
Sbjct: 27  atctatctatctatcatatcaataagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space:   690370
Effective search space used:   690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)