Query= MSMg01no478_d10.b1 MSMg01no478_d10.b1 CHROMAT_FILE:
MSMg01no478_d10.b1 PHD_FILE: MSMg01no478_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:53 2005
(646 letters)
>mm_chr16_90763648_90764693
Length = 1046
Score = 1172 bits (606), Expect = 0.0
Identities = 639/654 (97%), Gaps = 9/654 (1%)
Strand = Plus / Plus
Query: 1 tcagaagagagctatgtttctcttgctgaaaaaatgagtaacctggtgatgatccccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tcagaagagagctatgtttctcttgctgaaaaaatgagtaacctggtgatgatccccata 253
Query: 61 aagatgctttttagattgactgg-------cccagtcaggaactaatagacacaaactga 113
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 aagatgctttttagattgactggccactgacccagtcaggaactaatagacacaaactga 313
Query: 114 aacgagtgccctatatgagcactctt-ggacatgctgtcaatgtaatacgttaaaactga 172
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 314 aacgagtgccctatatgagcactcttgggacatgctgtcaatgtaatacattaaaactga 373
Query: 173 agcaaagatggtgcatgctaagacaaagatgcaggggatgaggacccagcagcttctgga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcaaagatggtgcatgctaagacaaagatgcaggggatgaggacccagcagcttctgga 433
Query: 233 ggtggtagctgggatgctggacatgaaagcgcaagggctgggactaatatcagacaccaa 292
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 434 ggtggtagctgggatgctggacatgaaagcgcaagggctgggacgaatatcagacaccaa 493
Query: 293 aggataggtcagtgactcagaagactgcaagagaaactgtgtgaacccaaatacagaggg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aggataggtcagtgactcagaagactgcaagagaaactgtgtgaacccaaatacagaggg 553
Query: 353 gagaaataccatggaaaaggcatgatgacttgtgagcagcaggggaacttgcaggaggcc 412
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||
Sbjct: 554 gagaaataccatggaaaaggcatgatgacttgtgagcagcaggg-accttacagggggcc 612
Query: 413 agggagtgactgaggtctaaaaggaacctggggaaacaagggccatgcttgaccccggct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agggagtgactgaggtctaaaaggaacctggggaaacaagggccatgcttgaccccggct 672
Query: 473 ctactgtaacagctaaggagctcctgcggcacaggcgcacacacaaaggaaactatgaaa 532
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 673 ctactgtaacagctaaggagctcctgcggcacaggcacacacacaaaggaaactatgaaa 732
Query: 533 aacagaggcaaaaagaaagaaagaaaatgtcttcctaagatcaagctgtaggtaagccca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aacagaggcaaaaagaaagaaagaaaatgtcttcctaagatcaagctgtaggtaagccca 792
Query: 593 tgtgtggggcattttcttaattagtgatcaatgtgggagggcccagtccacggt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgtgtggggcattttcttaattagtgatcaatgtgggagggcccagtccacggt 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d10.g1 MSMg01no478_d10.g1 CHROMAT_FILE:
MSMg01no478_d10.g1 PHD_FILE: MSMg01no478_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:53 2005
(664 letters)
>mm_chr16_90908353_90909416
Length = 1064
Score = 1170 bits (605), Expect = 0.0
Identities = 645/659 (97%), Gaps = 2/659 (0%)
Strand = Plus / Minus
Query: 1 ttcctagcatcaagcttaagcctccacatgcatgcagacatatatgtgcatgtacgcccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 659 ttcctagcatcaagcttaagcctccacatgcatgcagacatatatgtgcatgcacgccct 600
Query: 61 catacatgtatggtcacacatgtgcatgccacaccacatacaaatggaaaaagagaaaat 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 599 catacatgtatggtcacacacgtgcatgccacaccacatacaaatggaaaaagagaaaat 540
Query: 121 gggtaatagaaatcacaccgtgtctgctataatgtagagtaaatgtttctctggtgacat 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 539 gggtaatagaaatcacaccgtgtctgctataatgtagagtaaatgtctctctggtgacat 480
Query: 181 ttaagacgtgtcactcagcacccctcaagttctgtccaggccctgcaatgtggatgaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttaagacgtgtcactcagcacccctcaagttctgtccaggccctgcaatgtggatgaagg 420
Query: 241 tgtcatatacctgggaacactgaggacgttctgttgccactcaacaacagggcatctttc 300
||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 419 tgtcagacacctgggaacactgaggatgttctgttgccactcaacaacagggcgtctttt 360
Query: 301 gtgacaaagatatgttctgtgggcctcagtacttagcctgtgaccctgcaggtccctcgt 360
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 gtgacaaagacatgttctgtgggcctcagtacttagcctgtgaccctgaaggtccctcgt 300
Query: 361 ctacatgcaatgaagaactactgtgaggttgaagacagacatgtgaggttggggtgagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctacatgcaatgaagaactactgtgaggttgaagacagacatgtgaggttggggtgagag 240
Query: 421 ccagcagagctggcttcaggaggctcatgcctggtttgctttctgttgctgtgatgaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccagcagagctggcttcaggaggctcatgcctggtttgctttctgttgctgtgatgaaca 180
Query: 481 ccatggcccaaagcagcttagggaggacaggcacagggaggactggcacgggcgtgctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ccatggcccaaagcagcttagggaggacaggcacagggaggactggcacgggcgtgctac 120
Query: 541 gcttgcacaaaccaatcacagcagtctgtcactacagaaggcaagatgacaga--aacgc 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 119 gcttgcacaaaccaatcacagcagtctgtcactgcagaaggcaagatgacagagaaacgc 60
Query: 599 tgctcactggcttgttcttcgtgactggatcagcctgctttcttatcctacccagggcc 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 tgctcactggcttgttcttcgtgactggatcagcctgctttcttatcctacccagggcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
