Query= MSMg01no479_d22.b1 MSMg01no479_d22.b1 CHROMAT_FILE:
MSMg01no479_d22.b1 PHD_FILE: MSMg01no479_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:10 2005
(558 letters)
>mm_chr16_37386234_37387197
Length = 964
Score = 967 bits (500), Expect = 0.0
Identities = 537/564 (95%), Gaps = 26/564 (4%)
Strand = Plus / Minus
Query: 5 gaattcccttcatgatcttcagaaaaaactttgttaacttgtttaatatgcttttccttt 64
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcccttcatgat------------ctttgttaacttgtttaatatgcttttccttt 733
Query: 65 atcagttctg------tttttttttcatagaatacatttgtgatagtatgatgcttgtga 118
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atcagttctggttttttttttttttcatagaatacatttgtgatagtatgatgcttgtga 673
Query: 119 tgagtgacctaagttttgtttgtaaacattttatgtctctttgctgaactggaatatctt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgagtgacctaagttttgtttgtaaacattttatgtctctttgctgaactggaatatctt 613
Query: 179 cttccttcacttttaccaaaaggccagacctccacatgctgtgggcttgttttcatattg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cttccttcacttttaccaaaaggccagacctccacatgctgtgggcttgttttcatattg 553
Query: 239 acccttaagtaggtaggtcaaattttgctgaagcaaagaaagcattctaaatccatcact 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acccttaagtaggtaggtcaaattttgctgaagcaaagaaagcattctaaatccatcact 493
Query: 299 ctatttaataatggctaactcaccaaatcgcctcctttcaaagaaaagctagacgtaaaa 358
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctatttaataatggttaactcaccaaatcgcctcctttcaaagaaaagctagacgtaaaa 433
Query: 359 agaggaagaaaatcttttagctctcattaactccgatgtttggaaatgaacaatgggcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agaggaagaaaatcttttagctctcattaactccgatgtttggaaatgaacaatgggcca 373
Query: 419 gaaagg----aaaaaaaaaaaaaaaaggcaacaggagacagcaaaagacagataggtatt 474
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 gaaaggaaaaaaaaaaaaaaaaaaaaggcaacaggagacagcaaaagac----aggtatt 317
Query: 475 gttaggtatctgatataggatttagaagcacttcaagatccagtttataacacatatgaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttaggtatctgatataggatttagaagcacttcaagatccagtttataacacatatgaa 257
Query: 535 atttgtttccatacttatttttca 558
||||||||||||||||||||||||
Sbjct: 256 atttgtttccatacttatttttca 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 964
Length adjustment: 10
Effective length of query: 548
Effective length of database: 954
Effective search space: 522792
Effective search space used: 522792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_d22.g1 MSMg01no479_d22.g1 CHROMAT_FILE:
MSMg01no479_d22.g1 PHD_FILE: MSMg01no479_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:10 2005
(595 letters)
>mm_chr16_37173692_37174687
Length = 996
Score = 1145 bits (592), Expect = 0.0
Identities = 595/596 (99%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 1 tctttccttgtgtttttatatgtacatttagcaggctcacactttatcttagagattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttccttgtgtttttatatgtacatttagcaggctcacactttatcttagagattttt 260
Query: 61 catttatgccacattagatttcattttaatttatcaataaataaacatttcataagatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttatgccacattagatttcattttaatttatcaataaataaacatttcataagatag 320
Query: 121 tggcccaagtacattctataatttttgtctgaacctaaagtttatatttttcacaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcccaagtacattctataatttttgtctgaacctaaagtttatatttttcacaaattt 380
Query: 181 agctataccaatagatgataatttttggatctattacttatttttatttgtcacttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctataccaatagatgataatttttggatctattacttatttttatttgtcacttttta 440
Query: 241 ggcacttttaaatatatctgaaaaaaaa-gatctttctctaagatataattaacactcat 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ggcacttttaaatatatctgaaaaaaaaagatctttctctaagatataattaacactcat 500
Query: 300 atctgatcttatttttatttgggccaaggatatttgaaaagacattcatttgtatttatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctgatcttatttttatttgggccaaggatatttgaaaagacattcatttgtatttatt 560
Query: 360 ttggaaacaaatttacttatgattaaatttcagaaattgaattaggtactaattttaaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggaaacaaatttacttatgattaaatttcagaaattgaattaggtactaattttaaaa 620
Query: 420 gacttatgaaagtaaataaatagcttacttcagtgaattaccagaaggttgaaaaatacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacttatgaaagtaaataaatagcttacttcagtgaattaccagaaggttgaaaaatacc 680
Query: 480 actatgtttacctgaggtgggggacttgcagcgctcaagttccaggggaactggactatc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actatgtttacctgaggtgggggacttgcagcgctcaagttccaggggaactggactatc 740
Query: 540 attcagctctgttaagcctgaaaatgaaaaggaggaggggtcgggagtgggaagag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attcagctctgttaagcctgaaaatgaaaaggaggaggggtcgggagtgggaagag 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space: 576810
Effective search space used: 576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
