BAC Information

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BAC

Clone NameMSMg01-479E16
Chromosome16 (Build37)
Map Location 45,534,198 - 45,712,868
singlet/doubletdoublet
Overlap geneLOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3
Upstream geneBoc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609
Downstream geneAbhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479E16.T7 (MSMg01no479_e16.b1)MSMg01-479E16.TJ (MSMg01no479_e16.g1)
ACCAG560207AG560208
length762764
length of high quality
(start - end)
619 (72 - 690)379 (324 - 702)
definitionCHROMAT_FILE: MSMg01no479_e16.b1 PHD_FILE: MSMg01no479_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:14 2005CHROMAT_FILE: MSMg01no479_e16.g1 PHD_FILE: MSMg01no479_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:14 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(45,534,198 - 45,534,816)(45,712,523 - 45,712,868)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGATTCCAAAAAAAACACACTTGAGGCTGCATTTAGAGCGATCCT
ACTGCCAGTGGGTGGGCAGTTCACGCTGGCTCAGCATGGCCAGGCAGTGA
TTCGGGCAAGGGACTATACTGAAGCTCCACGTATTCAAGTGGCCCTGTAG
ATGACACAGTGGCCCACGCCAGCGGCAGCCCCCCTCACTGTGGATGCTGC
GTGTAGACAAGCCTAATACCTGGATCTCCAGTCTGGGTCTGGGTAGATCT
TGGCATAGCTGGTCCTCATGTCCTTAGAAGATTCCTTCACTGAGGAACTC
TTGCAGGCAGGTGTCGCAAAAGCTGTGGCCTCAGGTAGACACCTGCACAG
GCTCGCGCATGGGTTTCCCACACAGTGGGAACAGCATCCACAGCTTGGGC
TTCTCCAGAAACTTGTAGTCGGGCATGGCGCGCTGGCGATGGGCACGTGG
TAGTCCCACAGCCTGCGCCTCACTCTGGCCAAGTTTTCCCTTAATTCTAT
TTTTAATATAAGAAAGGCATTCAAATCTTATAATTTCCATGTAAATGCTT
AGTTGAGATACTCTTAACTTTCATTCCATTAAAACTTTATAAGTAGTTTA
CCAGTTTTAAACTTTCATGGTTTCTTTGACCATTTGCGAAATGGATTTAC
ACTGTTAACTTGTGGAAAAATTCCCTTCAATGATCCTTGCTGTTTGGAGC
TGTCCAGCTATN
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGGAAGGACATGGCAGCTGTGCAGAG
GACTCTGATGGCCTTGGGCAGTGTTGCAGTTACCAAGGATGATGGCTGCT
ACCGGGGAGAGCCATCCTGGTTTCACAGGTAAGTCTTTCCCTGCCTCTCA
TAGAAGGGCAGAGGGAGGGCCTGACCCCTTAGCTACCAGATGCCGTCTAC
CCAGAAGTAAACAAAGAAGTGCCACCACAAGGCCCACTGAGCAAGGAAGG
CTGACGCTGCTGTTCTCTTTTTACACCCAACCGAAGCAGAGGTTCTTGAG
TTTTCCTGTTAGTTCCCTGCATCCCCTCTCCCTTGTTCCTTTCCTTCTTT
TATCTTTTTAATTTTCTTTGATGCACCTAATGAAAATTAAATATGTCCCT
CTGCCAAGTACCATCTCAGTTTATAACTATTACCCAGCAAGTTGACTAAT
GGCTTCCTCTTTGCCTCTCAAAAGAGTCCTGATCTGAGTGATGAATTATG
TGATTATTTCAGTCCTGAAAGGGCCTTTAGAACCTTTCTCTTAAGTGATC
TTTTTGGCTGTGAGAACAGAGACAGAGATGTGCAAACTGAAGACTTTGGT
GGCAGATGAAAGGGGTGCTATTAGCAGCTACTGGATAATTCACTTTATTC
GGCTTTCTAATGTTTTTTTTTTCTCATCCCGCAGAAATATAGAAGGATCC
TACCTATGTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_e16.b1 MSMg01no479_e16.b1 CHROMAT_FILE:
MSMg01no479_e16.b1 PHD_FILE: MSMg01no479_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:14 2005
         (619 letters)



>mm_chr16_45533998_45535016
          Length = 1019

 Score = 1189 bits (615), Expect = 0.0
 Identities = 618/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacttgaggctgcatttagagcgatcctactgccagtgggtgggcagttcacgctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttgaggctgcatttagagcgatcctactgccagtgggtgggcagttcacgctggct 260

                                                                       
Query: 61  cagcatggccaggcagtgattcgggcaagggactatactgaagctccacgtattcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcatggccaggcagtgattcgggcaagggactatactgaagctccacgtattcaagtg 320

                                                                       
Query: 121 gccctgtagatgacacagtggcccacgccagcggcagcccccctcactgtggatgctgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccctgtagatgacacagtggcccacgccagcggcagcccccctcactgtggatgctgcg 380

                                                                       
Query: 181 tgtagacaagcctaatacctggatctccagtctgggtctgggtagatcttggcatagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagacaagcctaatacctggatctccagtctgggtctgggtagatcttggcatagctg 440

                                                                       
Query: 241 gtcctcatgtccttagaagattccttcactgaggaactcttgcaggcaggtgtcgcaaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctcaggtccttagaagattccttcactgaggaactcttgcaggcaggtgtcgcaaaa 500

                                                                       
Query: 301 gctgtggcctcaggtagacacctgcacaggctcgcgcatgggtttcccacacagtgggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgtggcctcaggtagacacctgcacaggctcgcgcatgggtttcccacacagtgggaa 560

                                                                       
Query: 361 cagcatccacagcttgggcttctccagaaacttgtagtcgggcatggcgcgctggcgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcatccacagcttgggcttctccagaaacttgtagtcgggcatggcgcgctggcgatg 620

                                                                       
Query: 421 ggcacgtggtagtcccacagcctgcgcctcactctggccaagttttcccttaattctatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcacgtggtagtcccacagcctgcgcctcactctggccaagttttcccttaattctatt 680

                                                                       
Query: 481 tttaatataagaaaggcattcaaatcttataatttccatgtaaatgcttagttgagatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttaatataagaaaggcattcaaatcttataatttccatgtaaatgcttagttgagatac 740

                                                                       
Query: 541 tcttaactttcattccattaaaactttataagtagtttaccagttttaaactttcatggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttaactttcattccattaaaactttataagtagtttaccagttttaaactttcatggt 800

                              
Query: 601 ttctttgaccatttgcgaa 619
           |||||||||||||||||||
Sbjct: 801 ttctttgaccatttgcgaa 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no479_e16.g1 MSMg01no479_e16.g1 CHROMAT_FILE:
MSMg01no479_e16.g1 PHD_FILE: MSMg01no479_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:14 2005
         (379 letters)



>mm_chr16_45712090_45712868
          Length = 779

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Minus

                                                                       
Query: 33  ctgttagttccctgcatcccctctcccttgttcctttccttcttttatctttttaatttt 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ctgttagttccctgcatcccctctcccttgttcctttccttcttttatctttttaatttt 720

                                                                       
Query: 93  ctttgatgcacctaatgaaaattaaatatgtccctctgccaagtaccatctcagtttata 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctttgatgcacctaatgaaaattaaatatgtccctctgccaagtaccatctcagtttata 660

                                                                       
Query: 153 actattacccagcaagttgactaatggcttcctctttgcctctcaaaagagtcctgatct 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 actattacccagcaagttgactaatggcttcctctttgcctctcaaaagagtcctgatct 600

                                                                       
Query: 213 gagtgatgaattatgtgattatttcagtcctgaaagggcctttagaacctttctcttaag 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gagtgatgaattatgtgattatttcagtcctgaaagggcctttagaacctttctcttaag 540

                                                                       
Query: 273 tgatctttttggctgtgagaacagagacagagatgtgcaaactgaagactttggtggcag 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgatctttttggctgtgagaacagagacagagatgtgcaaactgaagactttggtggcag 480

                                                         
Query: 333 atgaaaggggtgctattagcagctactggataattcactttattcg 378
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atgaaaggggtgctattagcagctactggataattcactttattcg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)