BAC Information

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BAC

Clone NameMSMg01-479H08
Chromosome16 (Build37)
Map Location 67,360,167 - 67,360,636
singlet/doubletsinglet
Overlap geneCadm2
Upstream genenone
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479H08.T7 (MSMg01no479_h08.b1)MSMg01-479H08.TJ (MSMg01no479_h08.g1)
ACCAG560334AG560335
length7581,269
length of high quality
(start - end)		696 (50 - 745)---
definitionCHROMAT_FILE: MSMg01no479_h08.b1 PHD_FILE: MSMg01no479_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:28 2005CHROMAT_FILE: MSMg01no479_h08.g1 PHD_FILE: MSMg01no479_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAATTTCCTTCTTTAACACTCGAGTAATATTCCATTCTGT
AAACATAACATATATTCTTTATCAATTTTCTGTTGATGGGCATCTAGTCT
TCATCCTTTTTCTGACTATCATGAATTGAGTAACAATGCCCGTGGTTGAG
AATGTACCTCTGTTAGGATGAAGGGTCCTTTGGGCATATACCTAGATTAA
TGTAGCTGGACTTTGAGGTTGAGGTATTCCCAGCTTCGTGAGGAAACGAA
AGACACAAAGATATCTCTAACAGCTGTACAAGTTTGCACTCCCACAAGAA
ATGGGTGGACATTTCCCTTATTCCACATCCTCACATCCTCACCAGCAAGT
TGTAATTTGTATTATTTATCTTGGCTATTCTTACTATAATAAGATGAAAT
GTCAAAATAGTTTTAATTTGTATTTATGTGGTAAATTGTGTGTGTCTGTG
TATAATTAAATTTCATAATTCTAGTCCATAATAATGAAGAAAATTTATGT
TACCTGAATTTGTGGAGGAAAAATAACCTTAGTGGGGTTATAGAGGGAGG
GATTGTTATAAATGCTGTATTCATATATTAGATTATCAAAAAGTAAGTGA
AAGTTATCAGAGTTTCTCTCTTAAAAACAATGCCAAAGAATTTCTTAATA
AGTGTAAAGTGTTTACTTTTGGATGAATGAAAGTAGAAATTATTACATAT
TACAAATT

CGGTATTATTGTCTACGCAGAGTAGGGAGAGAGCGACGGAATCTATCGAG
ACGTGGCCGCCGCNNTNTGCATAATCTTCCCAACGTAAACGTCAAGANAG
GACTGTCGTGCGTCATCTCCGTTCATTCAGACTTACCGCATTTAGCCTTC
GCTTCGTATCAGGTCATTGCTACCTCTGCGATAAGCGACTATAATACACA
CTAACATCCTACAATACACTGCCCCAATACCTTATATGTATTAAATTGCA
TTCGTCCAAGATACAGACCAATCCATTGTAGTCTCGATACGTTTGCGTCC
ATCGATTGTCGATGATTCGCTGGCATATATGCGAATGTGTTACGAAAGCG
CTAACACATAACATAGCATACTACTAACACTTACGTTACGATACGAAGAG
ATAGTCCAATCCGTTCTTCCGCTAGCGCCACATTCACTAATACTATGACA
TTATCCGATCATAACACATCAAACTGGTACGATACTACATACAATAACCA
CGAGTACTTATAGAAGCCTATAAATCCCAATATGCGCCGCAATATATATA
TTATTATCATCACGCAAANCTCACCACATTGTATATACACACACTATATT
CATCGTTAATATTACACACCCACCGAATATTCGATATTAAGCTGCGCGCC
GCACTCGAGTTACACCCGTGCTCTAATTATTGAACTTATATGCAGATCGA
CTATGCACTATANCACATTCATAAGACATCGTTCCCGTACAGTAGNTAAT
AGCTTAGCGAATATAACACTTCCGATATATACGACAAAGCAGTTATGCNT
ATTGCGCTAATCCAGATACAAGATCGTGTAATCGCCGCGATATATAACGC
CACAGACACACATGTCGAACCATCTACGCATCAGCTTATAATCGACAATG
CACGACCGCTTACGTGTACGTAATCTACGCGAGACTCGTTGNTACCGATA
CTGGTGCGAGTGTCGGGTGACGTATCGATCAACGCCAATACTACTAATAA
TATATCAATGATATATCTCCAGCACTATCGTGTCTTACAGCGATTTATGT
ACCACAACTACTATATCACGACCNCGATCGACAGCCGACTCACTTTGTGA
TGACGCGCGCGCCGCGATATGAGACGCGGTGTAGTTGTAAGACTCATTAA
TACTTATGCGGCGTCAGCAGTGATGTGCCACTGATGTACTAATGTAATGT
GTAGTNTNGCCACCCACAGCATTNTGAATTAGCGCGCGGGTNCTTCACAT
CGAGCTGCGCGGTATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_h08.b1 MSMg01no479_h08.b1 CHROMAT_FILE:
MSMg01no479_h08.b1 PHD_FILE: MSMg01no479_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:28 2005
         (696 letters)



>mm_chr16_67359541_67360636
          Length = 1096

 Score =  870 bits (450), Expect = 0.0
 Identities = 465/470 (98%)
 Strand = Plus / Minus

                                                                        
Query: 227  attcccagcttcgtgaggaaacgaaagacacaaagatatctctaacagctgtacaagttt 286
            |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 1096 attcccagcttcgtgaggaaacaaaagacacaaagatatctctagcagctgtacaagttt 1037

                                                                        
Query: 287  gcactcccacaagaaatgggtggacatttcccttattccacatcctcacatcctcaccag 346
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gcactcccaccagaaatgggtggacatttcccttattccacatcctcacatcctcaccag 977

                                                                        
Query: 347  caagttgtaatttgtattatttatcttggctattcttactataataagatgaaatgtcaa 406
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  caagctgtaatttgtattatttatcttggctattcttactataataagatgaaatgtcaa 917

                                                                        
Query: 407  aatagttttaatttgtatttatgtggtaaattgtgtgtgtctgtgtataattaaatttca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  aatagttttaatttgtatttatgtggtaaattgtgtgtgtctgtgtataattaaatttca 857

                                                                        
Query: 467  taattctagtccataataatgaagaaaatttatgttacctgaatttgtggaggaaaaata 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  taattctagtccataataatgaagaaaatttatgttacctgaatttgtggaggaaaaata 797

                                                                        
Query: 527  accttagtggggttatagagggagggattgttataaatgctgtattcatatattagatta 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  accttagtggggttatagagggagggattgttataaatgctgtattcatatattagatta 737

                                                                        
Query: 587  tcaaaaagtaagtgaaagttatcagagtttctctcttaaaaacaatgccaaagaatttct 646
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 736  tcaaaaagtaagtgaaagttatcagagtttctctcttaaaaacaacgccaaagaatttct 677

                                                              
Query: 647  taataagtgtaaagtgtttacttttggatgaatgaaagtagaaattatta 696
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  taataagtgtaaagtgtttacttttggatgaatgaaagtagaaattatta 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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