BAC Information

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BAC

Clone NameMSMg01-480M23
Chromosome16 (Build37)
Map Location 24,065,227 - 24,065,516
singlet/doubletsinglet
Overlap genenone
Upstream geneKng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6
Downstream geneEG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480M23.T7 (MSMg01no480_m23.b1)MSMg01-480M23.TJ (MSMg01no480_m23.g1)
ACCAG561362AG561363
length724720
length of high quality
(start - end)
288 (331 - 618)322 (333 - 654)
definitionCHROMAT_FILE: MSMg01no480_m23.b1 PHD_FILE: MSMg01no480_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:14 2005CHROMAT_FILE: MSMg01no480_m23.g1 PHD_FILE: MSMg01no480_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCATXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCGTAGCGGCGCGG
AATTCCATGNCTGTTGCAACACCAGGCGGAGNTGCTGGGTCCAGGACTTC
CCATATCTCCTCTATCGGATACTGCAGTAAAACTTCGATGCTCCAGTTTG
AGACCGTACCAGCAATAAAATGCCATTTCCAAGCCTGCTCCATGTCCTAA
CCTTCCTGGGACTTCAGTCTAAGCTCATATAGTGTTTTCATTCTTTCCAC
ACTAATATCCCCTGCTGTTTCCCAAGGAACCTCACAAGGCAGTTACTCTA
AAGGGGAAAGGGACCAACGGATCTAGATTGATTTTAGGGTTTGTTTGTTT
GTTTGTTTGTTTGTTTGTTTTTTCTCCCATTTGGGAATGTTTCCTCAAAA
TAAAATACAACTATTGCAAAAGACCACAGAGGTACTCTGTTAGCTTGGGT
ATTGCTGTTAATGAGCCAAGCCTCTGCTTTGAAGCATGTGAATTGTTTTC
AAATCAATTGGAATTGACAGGTTAGATAACATGTCGTTCTTAACTCCGAC
TACATATCAGTGTATCATACATGTTTGCATGTCCTTGAAAACAAAACACC
ATTTGTTGTTGATTGCAGGTGATAATTTTTGTCAATATTTCAATTTTTAT
AGAAATTTAAATTTCATTTTTTTAAAACCGTAAAAGCTTTACTGTTGTAG
TTTATTGTGGTAGTCCAAAGGGAA
NCACGATGATATGNGTAGGCCTGGGGGNCGCCTGGCCTCATAAACGGGGT
NGAACTATANAAGGATTTCAGAAAAACGGGAAGTTAGACTCCAAAGAACC
AAATAACCCTATTAAAAATTGCTAATACCCAATATATACAAAGAAGTCAA
GAAGTTAGACTCCAAAGAACCAAGTAACCCTATTAAAAAATTCTCAACTG
AGGAATACCGAATGGCTTAGATGCACCTAAAGAAATGCTCGACATCCTTA
GTCATCATGAAAATGAAAATCAAAACAACTCGGAGATTCCATCTCATACC
AGTCAGAATGGCTAAGATCAAAGTTTCTGGTGACAGCAGATGCTGGTGAG
GTTGTGGAGAAAGAGGAACACTCCTCCATTGCTAGTGAGATTGCAAGCTG
GTACAACCACTCTGGAAATCAGTTTAGCAGTTCCTCAGAAAATTAGACAA
TACTACCTGAGGACCCACTAATACTCCTCCTGGGCATATACCCAGAAGAT
ACTCCAACATGTAATAAGGACACATGTTCCACTATGTTCACTGAAGCCTT
ATTTATAATAGCTAGAAGCTGGAAAGAATCTCTAGTTCTTTGATGGATCT
CTTGTTAGAATTTACCCTATTAGGAAAGGGGCTGATTCTAAAATGTTACA
CTCAGTATAATTCCATACACATTACATTTTTAGTTTGAGAAAATGTCCTG
AGAAGAGATAACAGTTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_m23.b1 MSMg01no480_m23.b1 CHROMAT_FILE:
MSMg01no480_m23.b1 PHD_FILE: MSMg01no480_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:14 2005
         (288 letters)



>mm_chr16_24065027_24065716
          Length = 690

 Score =  511 bits (264), Expect = e-149
 Identities = 283/290 (97%), Gaps = 2/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttagggtttgtttgtttgtttgtttgtttgtttgttttttctcccatttgggaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttagggtttgtttgtttgtttgtttgtttgtttgttttttctcccatttgggaatgt 260

                                                                       
Query: 61  ttcctcaaaataaaatacaactattgcaaaagaccacagaggtactctgttagcttgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttcctcaaaataaaatacaactattgcaaaagaccacagaggtactctgtttgcttgggt 320

                                                                       
Query: 121 attgctgttaatgagccaagcctctgctttgaagcatgtgaattgttttcaaatcaattg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgctgttagtgagccaagcctctgctttgaagcatgtgaattgttttcaaatcaattg 380

                                                                       
Query: 181 gaattgacaggttagataacatgtcgttcttaactccgactacatatcagtgtatcatac 240
           |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 381 gaattgacgggttagataacatgtcgttctcaactccaactacatatcagtgtatcatac 440

                                                             
Query: 241 at--gtttgcatgtccttgaaaacaaaacaccatttgttgttgattgcag 288
           ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatgtttgcatgtccttgaaaacaaaacaccatttgttgttgattgcag 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space:   189999
Effective search space used:   189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)