BAC Information

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BAC

Clone NameMSMg01-481A20
Chromosome16 (Build37)
Map Location 83,884,901 - 83,885,360
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481A20.T7 (MSMg01no481_a20.b1)MSMg01-481A20.TJ (MSMg01no481_a20.g1)
ACCAG561548AG561549
length773767
length of high quality
(start - end)
596 (43 - 638)601 (71 - 671)
definitionCHROMAT_FILE: MSMg01no481_a20.b1 PHD_FILE: MSMg01no481_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:32 2005CHROMAT_FILE: MSMg01no481_a20.g1 PHD_FILE: MSMg01no481_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTAACAC
AGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGG
GAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTTGAAC
TTTCTAATGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCT
TTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTT
GTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAAATTCTGG
ATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGA
GCAAAGAGGAAATATGGTGCACAGAATAAGTATACAGGCCTTTCCACGGG
TCTTGAACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGA
TTAGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATCAGTGGAG
GTCTCTAGTAGAAGGAGCCTATACTCATCACTAGATGAGCTCAAAGAGCC
AGTTCTTAATAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTGGAAGG
CGCTCTCCGGAGCAGGTGAAGCCACTGGACAACTAACAAAGATCGTCCAG
GGACCTCANGAGTCATTCTCAGATTTTGTGGNCAGAATGACAGAAGCAGC
AGAGCGTATTTTTGGAGATCAAN
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTACAACGATACTGAGGGGGCACATTCTT
ATGCATTAGTTGTTTTCTTAACTAACTTAAAATCACCACGAAGTGAAACA
GAAGCAAGTATGGGGTGTTCATAATTATACAAATGGTTCATTAAGTTTTC
TGTTGACAACACAACATTTGTGCCTACATTTCTCCTTGATATGCTTATAT
TTCTCATTCACACTTGTTTGCTTTAATACGTTAGATGCAATTCTACCTCC
ACAATGAGGTTATTAAACCAAGGATACACGAGCCGGGCATGGTGGCACAT
GCCTTTAATCCCAGCACTCGGCAGATTTCTGAGTTCGAGGCCAGCCTGGT
CTACAAAATGAGTTCCAGGACAGTCAGGGCTATACAGAGAAACCCTTTCT
CGAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACACCCCAA
AACAACAAACAAACAAACAAAAAACCAAGGATACTCAAAAGTTACATGGC
TCTGGTTGGTGTTTGAATATAGTCAATTTACTTTTCAAACTCATGGTCTT
GGTAAGTATAATAGGCTGCTAATATACCTATAGTATTTTATCTTCATAGA
TACAGTTAAACATTTCAACTAATTGTTTCCACATTTTATGCTTTCTCAGA
GAGCGATATTAATGCTATTCTTAATATTTAAAGATTGCACAAATTAAATA
GCTGCTATGTGGGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_a20.g1 MSMg01no481_a20.g1 CHROMAT_FILE:
MSMg01no481_a20.g1 PHD_FILE: MSMg01no481_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:33 2005
         (601 letters)



>mm_chr16_83884901_83885901
          Length = 1001

 Score =  814 bits (421), Expect = 0.0
 Identities = 452/465 (97%), Gaps = 5/465 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacaacgatactgagggggcacattcttatgcattagttgttttcttaactaacttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttacaacgatactgagggggcacattcttatgcattagttgttttcttaactaacttaa 401

                                                                       
Query: 61  aatcaccacgaagtgaaacagaagcaagtatggggtgttcataattatacaaatggttca 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 400 aatcaccacgaagtgaaacagaaacaagtatggggtgttcataattatacaaatggttca 341

                                                                       
Query: 121 ttaagttttctgttgacaacacaacatttgtgcctacatttctccttgatatgcttatat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttaagttttctgttaacaacacaacatttgtgcctacatttctccttgatatgcttatat 281

                                                                       
Query: 181 ttctcattcacacttgtttgctttaatacgttagatgcaattctacctccacaatgaggt 240
           |||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||
Sbjct: 280 ttctcattcacacttgtttgctttaataagttagatgcaattttatctccacaataaggt 221

                                                                       
Query: 241 tattaaaccaaggatacacgagccgggcatggtggcacatgcctttaatcccagcactcg 300
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 220 tattaaaccaaggatacacgagctgggcatggtggcgcatgcctttaatcccagcactcg 161

                                                                       
Query: 301 gcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagtcagggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagtcagggc 101

                                                                       
Query: 361 tatacagagaaaccctttctcgaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa 420
           |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||
Sbjct: 100 tatacagagaaaccctttctcga-----aaaacaaaacaaaacaaaacaaaacaaaacaa 46

                                                        
Query: 421 aacaccccaaaacaacaaacaaacaaacaaaaaaccaaggatact 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  aacaccccaaaacaacaaacaaacaaacaaaaaaccaaggatact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)