BAC Information

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BAC

Clone NameMSMg01-482H24
Chromosome16 (Build37)
Map Location 83,709,527 - 83,709,669
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482H24.T7 (MSMg01no482_h24.b1)MSMg01-482H24.TJ (MSMg01no482_h24.g1)
ACCAG562651AG562652
length742808
length of high quality
(start - end)
677 (39 - 715)143 (122 - 264)
definitionCHROMAT_FILE: MSMg01no482_h24.b1 PHD_FILE: MSMg01no482_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:25 2005CHROMAT_FILE: MSMg01no482_h24.g1 PHD_FILE: MSMg01no482_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGTACGATACCGAATGGCAGAGAAGCACCTGAAAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAATCTCAGGTGACAGAAGATGC
TGGTGAGGATGTGGAGAAAGAGGAATACTACTCCATTGTTGGTGGGATTG
CAAGCTTGTATAACCACTCTGGAAATCAGTCTCATGGTTCCTCAAAAATT
GGACATAGTACTATCGGAGGATCCCGCAATACCTCTCCTGGGCATATATC
CAGAAGATGTCCCAACCGGTAAGTAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATATCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGTGTACT
ACTCAGCTATTAAAAAGAATGCATTTATGAAATTCCTAGGCAAATGGATG
GACCTGGAGGGCATCGTCCTGTGTGAGGTAACCCAATCACAGAGGAACTC
ACACAATATGTGCTCAGTGATAAGTGGATATTAGCCTAAAACTTAGGATA
CCCAAGATATAAGGTACAATTTGCTAAAGGCATGAAACTCAAGAAGAACG
AAGACCAAAGTGTGGACACTTTGGCCCTTCTTAGAAATGGGN
AACAACCACATTGTCGAGTTAAGAATTACGCCTGTTCTTTCCXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCGCAATTCACCTGCTTGTTGGTAACATAAG
ATTAAAAAAAGTAAAAGAGAGAAAGGAATAAAGAGAAAAACAGTAACAAA
GTGGAAGAGGGACATTATAACAATATATTAGGTATATGAATTTTCTTTCA
AACATTATCAATCAAGGGATGAGGAAACCATTTGCAGACATATTAATACT
TAAATCCTTTTAATTGTCATACTTGAAACATCTTACTTATATACTTACGT
CTATACTTCTATATAGGGTAAATACATTATTGAAACAGGGAGCATATGAC
TGAACTAAGAAAACTTGCTGAAAAGCATACAAGTTGTACACTTGGCATTT
TGTGCATTTTCCATTTAATTTGGTTCCACTTTATAAAATACTTTATTCTA
CTTCCATTATGATTCTTTGATGCATTTTCCTTAACTTATTATCCATAAAT
GCTATCTACGGGCAATGTTATATCTTTATTTCCCGAAAAATTTTTATATT
CTACATGTTTGTGAACATTTTTAATTTACCGATACTTAATTCTAAAACTT
TTCTTTTATTCGGCAATTTGTTAATCCTGGATCTGGTATGGTAGTAAAGG
CACCGGTTATATTAATTCTTGGTCATTACGAATTTTTTTCTCAATGGCTT
ATTTTGTCTTAATTCAATTGCACCTCGGATATGTCTTCTTTGATCCTCCT
GTTGATCTTATTCCGTTTATGTGCTGTGGCTCTCGGTGAAGTTATGTTCC
TGATGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_h24.g1 MSMg01no482_h24.g1 CHROMAT_FILE:
MSMg01no482_h24.g1 PHD_FILE: MSMg01no482_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:25 2005
         (143 letters)



>mm_chr16_83709327_83709869
          Length = 543

 Score =  223 bits (115), Expect = 5e-63
 Identities = 136/143 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggaataaagagaaaaacagtaacaaagtggaagagggacattataacaatatattag 60
           ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct: 201 aaaggaagaaagagaaaaacagtaacaaagtgaaagagggatattataacaatatattgg 260

                                                                       
Query: 61  gtatatgaattttctttcaaacattatcaatcaagggatgaggaaaccatttgcagacat 120
           ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 261 gtatatgaattttctttcaaacagtagcaatcacgggatgaggaaaccatttgcagacat 320

                                  
Query: 121 attaatacttaaatccttttaat 143
           |||||||||||||||||||||||
Sbjct: 321 attaatacttaaatccttttaat 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)