BAC Information

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BAC

Clone NameMSMg01-482P08
Chromosome16 (Build37)
Map Location 28,374,693 - 28,374,999
singlet/doubletsinglet
Overlap geneFgf12
Upstream geneCcdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482P08.T7 (MSMg01no482_p08.b1)MSMg01-482P08.TJ (MSMg01no482_p08.g1)
ACCAG563000AG563001
length731739
length of high quality
(start - end)
306 (129 - 434)624 (77 - 700)
definitionCHROMAT_FILE: MSMg01no482_p08.b1 PHD_FILE: MSMg01no482_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:59 2005CHROMAT_FILE: MSMg01no482_p08.g1 PHD_FILE: MSMg01no482_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCCCCCTCTTAATTTGCGGCCCCCAAACGACCCCTTTTCACACGCAGG
GCCGNGGAANNCCTNGTAACTCACATCAGCCACTGACTAGCAGNCTTCAT
TTACCCTCTCCATCAGGTCTTATCCCGCCAAAGTTTGCTTGAGTACACCC
ATAAATTAACCCAAGAGCTTCCAGCTGGCTGCTCTCGACTTGAGACAGTA
AGCTGTGTGCACACAGCACAGACACAGGCAGGTACTGCCCTTGAATTTTA
GTCTAATTTTCAAGTGAATCTGGCAGAAGATAAACTTTTAGACTTCAGGT
TCCCTGTAGCAGGATTAGACTTTTTTTTGATGCACTGGCTAAGACACGGC
CTCTTTGAACCTGTTTGCTCATTACTTGTGGAAGTGTGGACTACGCTGTA
ACAGTTGCTTAAGGATTAATTTTTGACTCAATTTAGAGCTAAGCTAATTT
GAGTTCTTCCTATAGGCTCACCATTGAGCTTGCACATTTTAAATTGCTTA
AGAAATATAAAACAGTCTCCTTAAGGAGGCATAGCTAAGACATATGGAGT
AACCTAACACACTGTATAATTTATTTCTATAATTAAATGCAATATGTGCT
TCTTTCTACACATACATTGCTTGCTGCGCAAGATCACGGAAAAAAAAAGC
ATGGAAGATTTCTGTGGCCTGAGGCACCCAGGAAACGCTTCCCAGCCAAC
ATGAAATGGCAGGTGACATTTAGCAAAGGAG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAGTGATGAAATTCTTAGGCAAATGGATGGA
TCTGGAGGATATTATCCTGAGTGAGTTACCCAATCACAAAAGAATCCAAA
TAATATGCACTCACTGATAAGTGGATATTATCCCAGAAACATAGAATACC
TAAGATACAATTTGCAAAGCACATGAAACTCAAGAAGAATGAAGACTAAA
GTGTGGATAGTTCGTCCCTCCTTAGAATGGGGAACAAAATACCCATGGAA
GGAGTTACAGAGACAAAGTTTTATGCTGAGATGGAAGGCAAGACCATCCA
GAGACTGCCCCACCTGGAGATCCATCCCATAAACAGCCACCAAACCCAGA
CACTATTGCATATGCCACCCAGATTTTACTGACAGGACCCTGATACAGTT
GTCTCTTGTGAGGCTATGCCAGTGCCTGTCAAATACAGAAGTGGATGCTC
ACAGTCAGCTATTGGATGGAACACAGGGCCCCTAATGGAGGAGCTAGAGA
AAGCACACAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAA
TATGAACTAACCAGTACCCCAAGAGCTCCTGTCTCTAGCTGCATATGTAG
CAGAAGATGGTCTAGTCCGCCATCATTGGGAGGAGAGGCCCTTGGTCTTT
AGAAGATCATATGCCCCAGTACAGGGGAATGCCAGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_p08.b1 MSMg01no482_p08.b1 CHROMAT_FILE:
MSMg01no482_p08.b1 PHD_FILE: MSMg01no482_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:59 2005
         (306 letters)



>mm_chr16_28374493_28375199
          Length = 707

 Score =  501 bits (259), Expect = e-146
 Identities = 295/307 (96%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtttgcttgagtacacccataaattaacccaagagcttccagctggctgctctcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtttgcttgagtacacccataaattaacccaagagcttccagctggctgctctcga 260

                                                                       
Query: 61  cttgagacagtaagctgtgtgcacacagcacagacacaggcaggtactgcccttgaattt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagacggtaagctgtgtgcacacagcacagacacaggcaggtactgcccttgaattt 320

                                                                       
Query: 121 tagtctaattttcaagtgaatctggcagaagataaacttttagacttcaggttccctgta 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcaaattttcaagtgaatctggcagaagataaacttttagacttcaggttccctgta 380

                                                                       
Query: 181 gcaggattagacttttttttgatg-cactggctaagacacggcctctttgaacctgtttg 239
           ||||||||||||   |  |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggattagacacctagttgatgacactggctaagacacggcctctttgaacctgtttg 440

                                                                       
Query: 240 ctcattacttgtggaagtgtggactacgctgtaacagttgcttaaggattaatttttgac 299
           |||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctcattcctcgtgaaagtgtggactatgctgtaacagttgcttaaggattaatttttgac 500

                  
Query: 300 tcaattt 306
           |||||||
Sbjct: 501 tcaattt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 707
Length adjustment: 9
Effective length of query: 297
Effective length of database: 698
Effective search space:   207306
Effective search space used:   207306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)