Query= MSMg01no483_a16.b1 MSMg01no483_a16.b1 CHROMAT_FILE:
MSMg01no483_a16.b1 PHD_FILE: MSMg01no483_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:06 2005
(667 letters)
>mm_chr16_26900808_26901871
Length = 1064
Score = 1129 bits (584), Expect = 0.0
Identities = 643/666 (96%), Gaps = 9/666 (1%)
Strand = Plus / Minus
Query: 5 gaattcatgcctgttccccacaggcacacacaaaaggcagacccaagttattgcagcctc 64
||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 864 gaattcatgcctgctgcccacaggcacacacaaaaggcagacccaagttactgcagcctc 805
Query: 65 ccaggtaaggaccaaagcagccatttgtcatcattaagtgaatgagctattcttccttct 124
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct: 804 ccaggtaaggaccaaagcagccatttgtcatcattaagtgaatgggttattcttcattct 745
Query: 125 cctgactgcaagttcataaaaaagaaggtggccgag--aaaaaaaattgagccaaggaac 182
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 744 cctgactgcaagttcataaaaaagaaggtggccgagaaaaaaaaaattgagccaaggaac 685
Query: 183 aacaaaacttctgagcatagacaagcataaatgtcttagcctcaacttcccctgtgttaa 242
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 684 aacaaaacttctgagcatagacaagcataaatgccttagcctcaactttccctgtgttaa 625
Query: 243 gtgatgctaagtactaccatttattctctgtgtcatctgaagatgttttcttaactagct 302
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 gtgatgctaagtactaccatttattctccgtgtcatctgaagatgttttcttaactagct 565
Query: 303 ctataaactgcatccctgtactcattatctataattaaaagtaatgtttatctgttagat 362
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctataaactgcaaccctgtactcattatctataattaaaagtaatgtttatctgttagat 505
Query: 363 aatttaagaaatgcaatgaatctaagg-aaaaaaaaacattagggaacaagatccaacaa 421
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 504 aatttaagaaatgcaatgaatctaaggaaaaaaaaaacattaggg----ag--ccaacaa 451
Query: 422 gatccaaagtcagaggtagtcacaatgtgcactgtaccttttgtggtgacatttctgtga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatccaaagtcagaggtagtcacaatgtgcactgtaccttttgtggtgacatttctgtga 391
Query: 482 gtttgtgtgcatgtgtatgtacattatgactgcatagaatgcacattaggattagtaggt 541
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 390 gtttgtgtgcatgtgtatgtacattatgactgcataggatgcacattaggattagtaggt 331
Query: 542 gtggaaaatcactcctttccatacttggtatcatactatacatactattttgtattattt 601
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtggaaaatcactcatttccatatttggtatcatactatacatactattttgtattattt 271
Query: 602 tattcaacattaatatcacagagatttcctgcagttattccctattgggtgaaaatataa 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 270 tattcaacattaatatcacagagatttcttgcagttattccctattgggtgaaaatataa 211
Query: 662 aaatga 667
||||||
Sbjct: 210 aaatga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1064
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1054
Effective search space: 692478
Effective search space used: 692478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_a16.g1 MSMg01no483_a16.g1 CHROMAT_FILE:
MSMg01no483_a16.g1 PHD_FILE: MSMg01no483_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:06 2005
(620 letters)
>mm_chr16_26786914_26787933
Length = 1020
Score = 1048 bits (542), Expect = 0.0
Identities = 582/620 (93%), Gaps = 38/620 (6%)
Strand = Plus / Plus
Query: 1 cttatttgcaaaatgaaaggacaaatgtttgaacagctgcaaactgtagaatttgtaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cttatttgcaaaatgaaaggacaaatgtttgaacagctgcaaactgtagaatttgtaggc 298
Query: 61 ataacacacacacacatacaggtagacacacacacacacacacacacacacacacacaca 120
||||||||||||||||||||||||
Sbjct: 299 ataacacacacacacatacaggta------------------------------------ 322
Query: 121 cacacacacacacacacacacacacttttcttccagggcctttgattggagctgtgccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 --cacacacacacacacacacacacttttcttccagggcctttgattggagctgtgccac 380
Query: 181 agtaagaatccctaggtggcatacacatatttcaggtgtttagttgaatgctttgcatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaagaatccctaggtggcatacacatatttcaggtgtttagttgaatgctttgcatgg 440
Query: 241 tataaacttctccatgggaggcttaccctgacagagggaagaaaagggaaaaatgtgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataaacttctccatgggaggcttaccctgacagagggaagaaaagggaaaaatgtgaac 500
Query: 301 gaaccagatttcataacttattgtcttgcaatcagtcttgagatattgttttcctcccgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccagatttcataacttattgtcttgcaatcagtcttgagatattgttttcctcccgg 560
Query: 361 tacaaatactcttgcaacaattggggagtactgaggagttgagggtgggctcttagctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaaatactcttgcaacaattggggagtactgaggagttgagggtgggctcttagctgt 620
Query: 421 gcccttggcccttgaacaaacctttggtttccatttttacctttgtgtacttaagaaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccttggcccttgaacaaacctttggtttccatttttacctttgtgtacttaagaaacc 680
Query: 481 tgaataaaagggcttgcaaattcttatttaacttctttttaaagcacatgttctataaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaataaaagggcttgcaaattcttatttaacttctttttaaagcacatgttctataaat 740
Query: 541 atatactattgtttaggtctacttaatccacatgcagtcactgtaagtcctttcattgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatactattgtttaggtctacttaatccacatgcagtcactgtaagtcctttcattgac 800
Query: 601 tatatatttgaaatctgaga 620
||||||||||||||||||||
Sbjct: 801 tatatatttgaaatctgaga 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
