BAC Information

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BAC

Clone NameMSMg01-484C22
Chromosome16 (Build37)
Map Location 73,293,562 - 73,294,140
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318
Downstream geneLOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484C22.T7 (MSMg01no484_c22.b1)MSMg01-484C22.TJ (MSMg01no484_c22.g1)
ACCAG563932AG563933
length670760
length of high quality
(start - end)
---579 (77 - 655)
definitionCHROMAT_FILE: MSMg01no484_c22.b1 PHD_FILE: MSMg01no484_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:39 2005CHROMAT_FILE: MSMg01no484_c22.g1 PHD_FILE: MSMg01no484_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTTATTTGCGGCCGCTATCGACTCCTAATCGAGCGAGCCGCGGATTCC
AGAATGTCAACAATAGAACTTAAAAGAACCACGAAAGAATTTTTAAGGAG
GTTTATTGGGAAAAACAAAAATTTTTTTTCTCCCTGCCGGGGGCGGGGCG
CGGGCGCCCCCCCCTCCGCCCCCCCTTGTCCTCTCGGCCCGCCGTCCCCT
TCCGCCCCGGTCCCTCTCCCTTTTTTTTTCTCCCCCCCCCCCCCCCTCTT
TCTGTTTCCCCCCTTTTTTTCCCCCCTTTCTCCCCCCCTTCCCTCTCCCC
CCCCCCTCCCCTTCTCCCTCCCTCCCCCCCCCCCTCTCCCGCGCCCGCGC
GCTTTGCCCCTTTTTTTTTCTCTCCCCCCCCCCCCCCCCCCCCTTTCTTT
CCTTCCTCCCTCGCCGGCGCGCGCCGCCCGCCCCCCCCCCCCCCTTCCCC
CCCTTTCCCCCCCCCCTCCCCCCTCCTCTTTCCCTTCCCCCCCCCCGTCT
TCCTCCTTCCTTCCCCCCCCTCGTTTTTCCCTCTCCCCCGTTCCCTCCCC
TTCCCCCCCCCCCCCCTCTTTCCCCTCCCCCCTCTTCCCCCCCCCCTATT
CTTTCCTCCCTCCCCCCTTCCCTCTTCTCTCCCCCTTTCTCCCCCCCCCT
GTCCTGCCCCCGCCCCCCGG
NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGCCACTAGACATTTGAATA
AAGACAAAAAAGCTATAATGGAGACCCACAGCATGCTAAAGGCCTTACAT
ATGTGGACCAGGATGCTATAGGGCTCATCTCATACTTAATGTGTATCACA
TACCACCCATCATGGTTATAGCATCAAGAATTCCAGTTGTGACCTGTGTT
CAATATAATTCTGATCTTGTGATCAGTTTCATCTGGGCAATAGGGTAGGT
GTGAACTGGTGGTGGAAATACACAAGACCTAGATCTGATGAAAACAGTAG
CACGTTCAGTATCTCAGCAGAGTACCATGAAGGTGATAATCAGACTCACA
TGAATACAGCAAGGCATTTCAGGACGTTTGAGATAAAGAACAAAAGGATG
GTCTTCACGTTAAGGTCTAATGTGCCCTTTCGTTTATCATAGGCCAGCAT
GCATAATGTTTATGATATTCTTGTTATTAGCTATTTTGAATGTAAGATCT
GGTTTAAAGTATTCTTAAAGTACTGGGGGAAAATAAAATGGATTTAAGAA
ATATGGGAAATTATCATATGTGAGAAATTATTAAATAATTAAATGATAGG
GGCCACCAAGATGGCCCAGTTGATAAAGGTGCTTATCACAAAATCTGGTG
GCCTTGATTTCACTTCTAGAACTCACACGTTGGAAGGAGAGAACAACTCC
CGTAGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_c22.g1 MSMg01no484_c22.g1 CHROMAT_FILE:
MSMg01no484_c22.g1 PHD_FILE: MSMg01no484_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:39 2005
         (579 letters)



>mm_chr16_73293362_73294340
          Length = 979

 Score = 1011 bits (523), Expect = 0.0
 Identities = 565/579 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagccactagacatttgaataaagacaaaaaagctataatggagacccacagcatgc 60
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attaagccactagacttttgaataaagacaaaaaagctacaatggagacccacagcatgc 260

                                                                       
Query: 61  taaaggccttacatatgtggaccaggatgctatagggctcatctcatacttaatgtgtat 120
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaggcgttgcatatgtggaccaggatgctatagggctcatctcatacttaatgtgtat 320

                                                                       
Query: 121 cacataccacccatcatggttatagcatcaagaattccagttgtgacctgtgttcaatat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 cacataccacccatcatggttatagcatcaagaattccaggtgtgacctgtgttcaatat 380

                                                                       
Query: 181 aattctgatcttgtgatcagtttcatctgggcaatagggtaggtgtgaactggtggtgga 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aattctgatcttgtgatcaatttcatctgggcaatagggtaggtgtgaactggttgtgga 440

                                                                       
Query: 241 aatacacaagacctagatctgatgaaaacagtagcacgttcagtatctcagcagagtacc 300
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 441 aatacacaagatctagatctgatggaaacagtagcatgttcagtatctcagcagagtacc 500

                                                                       
Query: 301 atgaaggtgataatcagactcacatgaatacagcaaggcatttcaggacgtttgagataa 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaagatgataatcagactcacatgaatacagcaaggcatttcaggacgtttgagataa 560

                                                                       
Query: 361 agaacaaaaggatggtcttcacgttaaggtctaatgtgccctttcgtttatcataggcca 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 agaacaaaaggatggtcttcacgttaagatctaatgtgccctttcgtttatcataggcca 620

                                                                       
Query: 421 gcatgcataatgtttatgatattcttgttattagctattttgaatgtaagatctggttta 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gcatgcataatgtttatgatattcttgttattagctgttttgaatgtaagatctggttta 680

                                                                       
Query: 481 aagtattcttaaagtactgggggaaaataaaatggatttaagaaatatgggaaattatca 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtattcttaaagtactggggggaaataaaatggatttaagaaatatgggaaattatca 740

                                                  
Query: 541 tatgtgagaaattattaaataattaaatgataggggcca 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgtgagaaattattaaataattaaatgataggggcca 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)