BAC Information

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BAC

Clone NameMSMg01-484F18
Chromosome16 (Build37)
Map Location 89,485,006 - 89,613,792
singlet/doubletdoublet
Overlap gene5430433J05Rik
Upstream geneCldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484F18.T7 (MSMg01no484_f18.b1)MSMg01-484F18.TJ (MSMg01no484_f18.g1)
ACCAG564067AG564068
length782747
length of high quality
(start - end)		672 (70 - 741)673 (75 - 747)
definitionCHROMAT_FILE: MSMg01no484_f18.b1 PHD_FILE: MSMg01no484_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:53 2005CHROMAT_FILE: MSMg01no484_f18.g1 PHD_FILE: MSMg01no484_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,613,126 - 89,613,792)(89,485,006 - 89,485,678)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGCGG
AATTCAGAACTTACTATACATTCTCCCAATGAAGTTTGGGTTTATCAGTC
CCTGCGTATGCCCAAAATGTGACTAAACATACTGGATATAGTTTGAAATT
GTAAGAGGAGGGACCATCCTCTCCACTTGGGACTGGGGAGACCCACAAAT
GAGGGGCAGGAAGGATAGTAGGGAGAGTCTGTTGGGAGAGCTTCACTAAC
CATTCATTTCACACTGTCCTATGGAGCTAGGCTCCCAGGGGCTGGTAGAA
AACAACTGAAAAGAAAATCTGTTTGATCTATGGCTTTATTACCGATGGAC
TGAATTAAGGTAGACGGTGCCTGAAGATGTCACAGCCTGGACTGTATCTC
CTTAAACCTCATATACTGAAGTCTTTACCACACTTGCCCAAAATGTGATC
ACTTGGGAAATAAGGCCTTTAAAAAAAGGCAATTAAGAGCACTCTAATGA
GCACCCCACTGAGGACTCCACTGAGCACTCACCCCACTGAGCACTCACCC
CACTGCGTGTTCTCCACACTTTGACCATTTGTGAATCTCTGTATCAATCA
TTCTCCACTATGTAGATGATACTAGAGAGCCACATAATCTATATGTATAG
AGATATGTGCTTAGAAGGCAGTTTGATGCTTTATCACTATCATCCCTCCT
GCCCCCGACATACGCNAACACACACACACACACACACACACACACACACA
CACACACACACACACACACATGGGTCAAGAAN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGCTGGAAGTTTCCCTGTGCTGT
GGAGGCTCCTCTCTTGATCTCTGGGCTGAGAAACTGTTCCCACAGCCAAT
TAGGAGCTGACTTTACCTTACGTGCTTGAAGCCTCTGGTTCTCTGGGAAT
TCAGAAACTTTGACAACAAAACTACTCTATGAACAGTGAGAACACCAGTA
GAGTAAAATGAGGGGGGATCATTTTGTTATTTTTCTTAAATGTGTGAACA
ATGAAATGTGGTTATGAGATGCCTTACATCTAATAACTTCTGCTGCCTTC
AGATCCCCGACTGTCTTGTTTTATGAGAAACACTTTTACAAGTTAATATG
ACCAGATGCACTCGTCACATACATAATGCCACTCAGAGAATACTTCCCCT
ACCTTGTAAGAAGGACTGATGTGAACTTCTTCAAAACAAACTTTATAGAC
CACTGGGAAATGTTCACTGAGACATAGTGCAGCAGATATTCTGTTAAAAG
TAGCTCAAGACTTTAGAACATCCCTGTGAACCAAGACAGGTAACTAGATC
TTAACATTCTCCTATTTAGTTGCCACTGGGGAGTTATTCCTGCTAAGTGC
CCAAGAAGTTTCAAGGTCTAATGACCAAAGTAGAGGGTCTACCTGAGATG
AATAGAANACATAAAAATGGGACACAGAAAATCAAAGACCTAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_f18.b1 MSMg01no484_f18.b1 CHROMAT_FILE:
MSMg01no484_f18.b1 PHD_FILE: MSMg01no484_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:53 2005
         (672 letters)



>mm_chr16_89613126_89614197
          Length = 1072

 Score = 1137 bits (588), Expect = 0.0
 Identities = 647/667 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttctcccaatgaagtttgggtttatcagtccctgcgtatgcccaaaatgtgactaaacat 61
           ||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct: 667 ttctctcaatgaagtttgggtttatcagttcttgcgtatgccaaaaatgtgactaaacat 608

                                                                       
Query: 62  actggatatagtttgaaattgtaagaggagggaccatcctctccacttgggactggggag 121
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 607 gctggatatagtttgaaattgtaagaggaggaaccatcctctccacttgggactggggag 548

                                                                       
Query: 122 acccacaaatgaggggcaggaaggatagtagggagagtctgttgggagagcttcactaac 181
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 acccacaaatgaggggtaggaaggatagtagggagagtctgttgggagagcttcactaac 488

                                                                       
Query: 182 cattcatttcacactgtcctatggagctaggctcccaggggctggtagaaaacaactgaa 241
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 487 cattcattgcacactgtcctgtggagctaggctcccaggggctggtagaaaacaattgaa 428

                                                                       
Query: 242 aagaaaatctgtttgatctatggctttattaccgatggactgaattaaggtagacggtgc 301
           |||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 427 aagaaaatctgcaagatctatggctttattacagatggactgaattaaggtagacggtgc 368

                                                                       
Query: 302 ctgaagatgtcacagcctggactgtatctccttaaacctcatatactgaagtctttacca 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 367 ctgaagatgtcacagcctggactgtatctccttaaacctcatatactgaagtttttaccc 308

                                                                       
Query: 362 cacttgcccaaaatgtgatcacttgggaaataaggcctttaaaaaaaggcaattaagagc 421
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 307 cacttgcccaaaatgtgatcacttgggaaataaggtctttaaaaaaaggcaattaagagc 248

                                                                       
Query: 422 actctaatgagcaccccactgaggactccactgagcactcaccccactgagcactcaccc 481
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 accctaatgagcaccccactgaggactccactgagcactcaccccactgagcactcaccc 188

                                                                       
Query: 482 cactgcgtgttctccacactttgaccatttgtgaatctctgtatcaatcattctccacta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cactgcgtgttctccacactttgaccatttgtgaatctctgtatcaatcattctccacta 128

                                                                       
Query: 542 tgtagatgatactagagagccacataatctatatgtatagagatatgtgcttagaaggca 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgtagatgatactagagagccacataatctatatgtatagagatatgtgcttagaaggca 68

                                                                       
Query: 602 gtttgatgctttatcactatcatccctcctgcccccgacatacgcnaacacacacacaca 661
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 67  gtttgatgctttatcactatcatccctcctgcccccgacatacacaaacacacacacaca 8

                  
Query: 662 cacacac 668
           |||||||
Sbjct: 7   cacacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_f18.g1 MSMg01no484_f18.g1 CHROMAT_FILE:
MSMg01no484_f18.g1 PHD_FILE: MSMg01no484_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:54 2005
         (673 letters)



>mm_chr16_89484806_89485878
          Length = 1073

 Score = 1203 bits (622), Expect = 0.0
 Identities = 660/673 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggctggaagtttccctgtgctgtggaggctcctctcttgatctctgggctgagaaac 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggctggaagtgtccctgtgctgtggaggctcctctcttgatctctgggctgagaaac 260

                                                                       
Query: 61  tgttcccacagccaattaggagctgactttaccttacgtgcttgaagcctctggttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcccacagccaattaggagctgactttaccttacgtgcttgaagcctctggttctct 320

                                                                       
Query: 121 gggaattcagaaactttgacaacaaaactactctatgaacagtgagaacaccagtagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaattcagaaactttgacaacaaaactactctatgaacagtgagaacaccagtagagt 380

                                                                       
Query: 181 aaaatgaggggggatcattttgttatttttcttaaatgtgtgaacaatgaaatgtggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgaggggggatcattttgttatttttcttaaatgtgtgaacaatgaaatgtggtta 440

                                                                       
Query: 241 tgagatgccttacatctaataacttctgctgccttcagatccccgactgtcttgttttat 300
           ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 441 tgagatgccttacatctaatagcctctgctgccttcagatccccaactgtcttgttttat 500

                                                                       
Query: 301 gagaaacacttttacaagttaatatgaccagatgcactcgtcacatacataatgccactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaacacttttacaagttaatatgaccagatgcactcgtcacatacataatgccactc 560

                                                                       
Query: 361 agagaatacttcccctaccttgtaagaaggactgatgtgaacttcttcaaaacaaacttt 420
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 561 agagaatacttcccctaccttgtgagaaggaccgatgtgaacttcttcaaaacaaacttt 620

                                                                       
Query: 421 atagaccactgggaaatgttcactgagacatagtgcagcagatattctgttaaaagtagc 480
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 621 atagaccactgggaaatgttcactaagatatagtgcagcagatattctgttaaaactagc 680

                                                                       
Query: 481 tcaagactttagaacatccctgtgaaccaagacaggtaactagatcttaacattctccta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaagactttagaacatccctgtgaaccaagacaggtaactagatcttaacattctccta 740

                                                                       
Query: 541 tttagttgccactggggagttattcctgctaagtgcccaagaagtttcaaggtctaatga 600
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 741 tttagttgccactggggagttattcctgctaagtacccaagaagtttcaaggactaatga 800

                                                                       
Query: 601 ccaaagtagagggtctacctgagatgaatagaanacataaaaatgggacacagaaaatca 660
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 ccaaagtagagggtctacctgagatgaatagaaaacataaaaatgggacacagaaaatca 860

                        
Query: 661 aagacctagagag 673
           ||||||| |||||
Sbjct: 861 aagacctggagag 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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