BAC Information

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BAC

Clone NameMSMg01-484G18
Chromosome16 (Build37)
Map Location 16,793,161 - 16,793,646
singlet/doubletsinglet
Overlap geneSpag6
Upstream genePrkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik
Downstream geneEG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484G18.T7 (MSMg01no484_g18.b1)MSMg01-484G18.TJ (MSMg01no484_g18.g1)
ACCAG564113AG564114
length789765
length of high quality
(start - end)		597 (71 - 667)409 (76 - 484)
definitionCHROMAT_FILE: MSMg01no484_g18.b1 PHD_FILE: MSMg01no484_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:59 2005CHROMAT_FILE: MSMg01no484_g18.g1 PHD_FILE: MSMg01no484_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGAATTCCGTGGAAGATATTCAGTTATGATGGTTGTATCAAATG
TTGTGTTAAACACCATAAGCCAACTTATAGGATGAAGAGATTTTTTGGGG
TTGTGGTTCCAGGAGTCTGTTATGGTGAGCAGTAGGACAGCAAGCAGCCA
GCATGATAACTGTTTGTAACTGGAGCTCACATCTTGATCTACAACCAAGA
AGCAGAGAGAAAGAACTGGAAGAGGTGGAGTTTTTTGTTTTTTGTTTTTG
TTTGTTTTTTGTTTTTCCTCTCCTCTTTAAACCTACTCTAGTGATGTACT
TCCTTAAATAAGGCCAAACCTCCTAAACCACTTCAAACAGTGCCGTCAAC
TGGGAACTAAGTGCTCAAGTACATGAGCCTGTGGGGATATTCTCCTGCAA
ACCGCCACTGTGGCACATGCTAGCAGGACATGCTGATGATGTGGCAGCAG
GAGGGTCATGAGTTCATTAGTATATTTTAAAGAGTTTCAGGATTTTGTTT
CTTGCCCAATTTGATACCAGTTACATATCTCTATATCCAGCAGGGTCTCC
TTTTGCAACCCAGGCTAACTTTGAACTTGTGATTGATTACTCCCCTTTAG
CATCCCAAACACTGAGATTACAGGTTTACACTGTAGTTAGTGTCTGGCTT
TCAGNTGTTTGTTTTTGCTGATTTTTTTTTTTACTCTTTTTTTGTGNGGG
NATGTGCTAAATCACATGTTTTTAAAATACGCTTTATTT

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCATAATCAGCTTCCAAAAGCTG
ACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGC
TGTCTCTTATGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCT
CACAGTCAGCTATTGGATGGATCACAGGGACCCCAATGGAGAAGCTAGAG
AAAGTACCCAAGGAACTAAAGGGATCTGCAACCCTATAGGTGGAACAACA
TTATGAACTAACCAGTACCCTGAAGCTCTTGACTCTAGCTGCATATGTAT
CAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCTCATTGGACTT
GCAAACTTTATATACCCCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGG
ACTGGGTGAGTAGGGAGTNGGGGGGGGGAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_g18.b1 MSMg01no484_g18.b1 CHROMAT_FILE:
MSMg01no484_g18.b1 PHD_FILE: MSMg01no484_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:59 2005
         (597 letters)



>mm_chr16_16792650_16793646
          Length = 997

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 112 gtaggacagcaagcagccagcatgataactgtttgtaactggagctcacatcttgatcta 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 gtaggacagcaagcagccagcatgataactgtttgtaactggagctcacatcttgatcta 938

                                                                       
Query: 172 caaccaagaagcagagagaaagaactggaagaggtggagttttttgttttttgtttttgt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 caaccaagaagcagagagaaagaactggaagaggtggagttttttgttttttgtttttgt 878

                                                                       
Query: 232 ttgttttttgtttttcctctcctctttaaacctactctagtgatgtacttccttaaataa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ttgttttttgtttttcctctcctctttaaacctactctagtgatgtacttccttaaataa 818

                                                                       
Query: 292 ggccaaacctcctaaaccacttcaaacagtgccgtcaactgggaactaagtgctcaagta 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 817 ggccaaacctcctaaaccacttcaaacagtgccgtcaactgggaactaagtgatcaagta 758

                                                                       
Query: 352 catgagcctgtggggatattctcctgcaaaccgccactgtggcacatgctagcaggacat 411
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 757 catgagcctgtggggatattctcctgcaaactgccactgtggcacatgctagcaggacat 698

                                                                       
Query: 412 gctgatgatgtggcagcaggagggtcatgagttcattagtatattttaaagagtttcagg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gctgatgatgtggcagcaggagggtcatgagttcattagtatattttaaagagtttcagg 638

                                                                       
Query: 472 attttgtttcttgcccaatttgataccagttacatatctctatatccagcagggtctcct 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 attttgtttcttgcccaatttgataccagttacatatctctatatccagcagggtctcct 578

                                                                       
Query: 532 tttgcaacccaggctaactttgaacttgtgattgattactcccctttagcatcccaaaca 591
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 577 tttgcaacccaggctaactttgaacttgtgattgattactcccctttagcgtcccaaaca 518

                 
Query: 592 ctgaga 597
           ||||||
Sbjct: 517 ctgaga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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