BAC Information

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BAC

Clone NameMSMg01-484L05
Chromosome16 (Build37)
Map Location 38,066,952 - 38,067,503
singlet/doubletsinglet
Overlap genenone
Upstream genePolq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
Downstream geneLOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484L05.T7 (MSMg01no484_l05.b1)MSMg01-484L05.TJ (MSMg01no484_l05.g1)
ACCAG564324AG564325
length770725
length of high quality
(start - end)
---552 (76 - 627)
definitionCHROMAT_FILE: MSMg01no484_l05.b1 PHD_FILE: MSMg01no484_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:21 2005CHROMAT_FILE: MSMg01no484_l05.g1 PHD_FILE: MSMg01no484_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAAAGCGTGATGAGCNNNNNNAAGCACCGGNGNNNCACCTATXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCANGTAACAGGGAANTCNCAAC
TGTTGCAAAAAAAAANGGNNGAGAAGCACCNAAAAGAAAGGCCNACANCC
NNAGNCATCAGGGCAAAGCAAAACAAACAACCCCGGAGATTCACCCCAAA
CCAGGCAAAAAGGGAAAAACCAAAAACCCGGGGAACCAAAGGCGGGCGAA
AGGGGGAAAAAAAACCCCCCACGGGGAAAGGGAAAGCAAACGGGGAAAAC
CCCCGGGAAAAACAGCGGGGAAAACCCCCAAAAAAGGGGCAAAAGGAAAC
CCGGGTTTTTTTTGGAACCCCCCGGGGGGGAAACACCCAAAAAAGTTCTC
CATAATAAAAAAAGAGAAGGGGGCCCCCATTGTTTTTTAACACCCTCTTT
TTTTTATAAAAAACAAGCGGGGGGAAAAACCACATCACCCCCCCCCACAA
AAAGGGGAGAGAACAACAAGGGGGGGTTTTTTTTTTTACGGGGGGGGGCC
CCCCCCCCAAAAAAAAAAAAAATTTTTCCCTCCGACTTCTTCCGCGGGGG
GGGGGGGGGGGAAAAAAAAAATTCTTTCCGCGGTGGCGGGGGGTCCCCCC
ACAAAAAAAAAAAAAAAATTAGGTGTTTTCCGCCCCTCCGGGGGGGGGGG
GGTGTATGATAAAAACAAAAAAAAAAAACCATTTTTTTTTTTTTTCCACC
CCACGGCGCAAAAAAATAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGATGTAGACCAGTCTGGCCTCGA
TGAAACTGAAGAGATCTGCCTTCCTCTATGCATTCACCCCATCTGTGGCA
GAAGTGTTAAGGAATAGAACAAGTAGGGTAGACATGGGGCCCCTTGTGAC
CATCTCTCACTTTTGTGCTGGTGCACATATGGATAATAGAAAACTCAGCC
TCAGGATGCTTCTCAAGTTGTTCAGTGTGTGGGGTTAAACTACTACCCAC
CAACAGGAATCCTTGGACCATTTAGAACTATTTCCTTGGCTATAGGTAAG
TTCCATGTGACCATGTGACATATGAGCTAACTACTCCTAGATACAAAGAT
ATATGCCCTGAAAAGCAGCCGGCCCTAGGGAAGGCTCTCATCTTGCAGAG
ATTGGATGGCACAGCTGAATTTATGGGCACAGGGGTGGGCTTCTGTGCCT
CATGTCTCACCAGGAGAAGGGTGGGCTCCCAGGAGTATGTGCCCCCAGTA
GCCATCAGCTGTGGAACCGTCCTGCATGAAAATGAGGTTGGGCTGCCTGA
AAGAGTCTGCCCCCAGCTGCTTCTTGCTCAGGGCTGTTTCCGTTGTTGAA
GATACTTGATTGTTGAGAAGATGAAATGAAACAGTACCTGTAGAAGTTGT
TTGAAAACTTTTAAAACTGTATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_l05.g1 MSMg01no484_l05.g1 CHROMAT_FILE:
MSMg01no484_l05.g1 PHD_FILE: MSMg01no484_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:21 2005
         (552 letters)



>mm_chr16_38066700_38067651
          Length = 952

 Score =  982 bits (508), Expect = 0.0
 Identities = 541/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatgtagaccagtctggcctcgatgaaactgaagagatctgccttcctctatgcattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aggatgtagaccagtctggcctcgatgaaactgaagagatctgccttcctctatgcattc 745

                                                                       
Query: 61  accccatctgtggcagaagtgttaaggaatagaacaagtagggtagacatggggcccctt 120
           ||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||
Sbjct: 744 accccatctctggcagaagtgttaaggaataggacaagtagggtaaacacggggcccctt 685

                                                                       
Query: 121 gtgaccatctctcacttttgtgctggtgcacatatggataatagaaaactcagcctcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgaccatctctcacttttgtgctggtgcacatatggataatagaaaactcagcctcagg 625

                                                                       
Query: 181 atgcttctcaagttgttcagtgtgtggggttaaactactacccaccaacaggaatccttg 240
           ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 624 atgcttctcaagttgttaagtgtgcagggttaaactactacccaccaacaggaatccttg 565

                                                                       
Query: 241 gaccatttagaactatttccttggctataggtaagttccatgtgaccatgtgacatatga 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 gaccatttagaactatttccttggctataggtaagctccatgtgaccatgtgacatatga 505

                                                                       
Query: 301 gctaactactcctagatacaaagatatatgccctgaaaagcagccggccctagggaaggc 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 504 gctaactactcctagatacaaagatatatgccctgaaaagcagttggccctagggaaggc 445

                                                                       
Query: 361 tctcatcttgcagagattggatggcacagctgaatttatgggcacaggggtgggcttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctcatcttgcagagattggatggcacagctgaatttatgggcacaggggtgggcttctg 385

                                                                       
Query: 421 tgcctcatgtctcaccaggagaagggtgggctcccaggagtatgtgcccccagtagccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 tgcctcatgtctcaccaggagaagggtgggctcccaggagtatgtgctcccagtagccat 325

                                                                       
Query: 481 cagctgtggaaccgtcctgcatgaaaatgaggttgggctgcctgaaagagtctgccccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagctgtggaaccgtcctgcatgaaaatgaggttgggctgcctgaaagagtctgccccca 265

                       
Query: 541 gctgcttcttgc 552
           ||||||||||||
Sbjct: 264 gctgcttcttgc 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)