Query= MSMg01no484_m03.b1 MSMg01no484_m03.b1 CHROMAT_FILE:
MSMg01no484_m03.b1 PHD_FILE: MSMg01no484_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:26 2005
(667 letters)
>mm_chr16_80588494_80589560
Length = 1067
Score = 849 bits (439), Expect = 0.0
Identities = 454/459 (98%)
Strand = Plus / Minus
Query: 209 aggtgtgcagctcttatgccatacacagctctccttacttgcttattgagtcgagagctc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aggtgtgcagctcttatgccatacacagctctccttacttgcttattgagtcgagagctc 811
Query: 269 ttccttatgtcctagcatgaaagcattgcacctgccctttgttcccatgtatttccaata 328
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 810 ttccttatgtcctagcatggaagcattgcacctgccctttgttcccatgtatttccaaga 751
Query: 329 aatagcttgtctttggccaacatccagaacacacctgcaaactgagacttcaaattttag 388
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aacagcttgtctttggccaacatccagaacacacctgcaaactgagacttcaaattttag 691
Query: 389 tttcattcaaaatcagaggttaacctaagcaacatttgtataaaaagaggtgtcccagtg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttcattcaaaatcagaggttaacctaagcaacatttgtataaaaagaggtgtcccagtg 631
Query: 449 ttcaatttgaaattatattacaaacacatagaaataacacttgatgctattgcacaaaga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttcaatttgaaattatattacaaacacatagaaataacacttgatgctattgcacaaaga 571
Query: 509 gagaaatatcactttattgagtggagttgaggatccagatttgatcccacctaactgaag 568
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gagaaatatcactctattgagtggagttgaggatccagatttgatcccacctaactgaag 511
Query: 569 ttacctaatttttggcaaacatgccaaacacaaacattggagaaaacagaaaacatctaa 628
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 510 ttacctaatttttggcaaacatgccaaaaacaaacattggagaaaacagaaaacatctaa 451
Query: 629 caaatgttcattgttaaactgaatttcaacatgaaaaaa 667
|||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caaatgttcattgttaaactgaatttcaacatgaaaaaa 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_m03.g1 MSMg01no484_m03.g1 CHROMAT_FILE:
MSMg01no484_m03.g1 PHD_FILE: MSMg01no484_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:26 2005
(610 letters)
>mm_chr16_80468794_80469804
Length = 1011
Score = 1123 bits (581), Expect = 0.0
Identities = 604/613 (98%), Gaps = 5/613 (0%)
Strand = Plus / Plus
Query: 1 ctttattaaagataagaatgtacatgtaattttttttcagaaagaaaactcattctattc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctttattaaagataagaatgtacatgtaattttttt-cagaaagaaaactcattctattc 259
Query: 61 tatattggtacagattgaagaaacactaattttattataaatgtacaaataacatgaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 tatattggtacagattgaagaaacactaattttattataaatgtacaaataacatgaaat 319
Query: 121 atgcatagcttacataatgtgctagtctatgtcagagaaatgtttattagggaattacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgcatagcttacataatgtgctagtctatgtcagagaaatgtttattagggaattacta 379
Query: 181 tgcaggtttgattgacactgagataatttttaaagtaatataggattatcatatactaag 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 tgcaggtttgattgacactgagataatttttaaagtaatataggattattatatactaag 439
Query: 241 aaatgcagcaataaaataaatttaactattattccttaaattaagttattattattacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaatgcagcaataaaataaatttaactattattccttaaattaagttattattattacta 499
Query: 301 tcaattgctttttatgagatatggagtcttgcttttctgtaccactacgtttttctatgg 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 500 tcaattgctttttatgagatatggagtcttggttttctgtaccactacgtttttctatgg 559
Query: 361 aaactttacatttcttggtattgtaagggttcagtgatgagtagatttttctgatatgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaactttacatttcttggtattgtaagggttcagtgatgagtagatttttctgatatgtt 619
Query: 421 ct---cattaatcttagagctgacatattcaaaaacaatgatgaaatatactgtgtatta 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttctcattaatcttagagctgacatattcaaaaacaatgatgaaatatactgtgtatta 679
Query: 478 ttcagaagtatgtatctaaattaaattattttgctgttttttttttctttttagttagga 537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 680 ttcagaagtatgtatctaaattaaattattttgctgttttttttt-ctttttagttagga 738
Query: 538 atattgaccgtgcagtaccaattaaaatgaattttatttttcttctaataaccaagaaac 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atattgaccgtgcagtacccattaaaatgaattttatttttcttctaataaccaagaaac 798
Query: 598 tgtgtctacttat 610
|||||||||||||
Sbjct: 799 tgtgtctacttat 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
