Query= MSMg01no485_l02.b1 MSMg01no485_l02.b1 CHROMAT_FILE:
MSMg01no485_l02.b1 PHD_FILE: MSMg01no485_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:44 2005
(614 letters)
>mm_chr16_74087093_74088106
Length = 1014
Score = 998 bits (516), Expect = 0.0
Identities = 551/563 (97%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 53 atgtaaatgagaacctgtttcttttaaccagcatatgaatgaaacacttagacaaaaatt 112
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1014 atgtaaatgagaacctgtttcttttaaccagcatatgaatgaaacacttaaacaaaaatt 955
Query: 113 gctatttgaggggttgaggagattgacagttgatgtttgatggaaccttctagagacttg 172
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 954 gctatttgaggggttgaggagattgacagttgatgtttaatggaaccttctagagacttg 895
Query: 173 ggtttagatcccaacactcaagtccagtgactcacagtctctaaaactccagctccagga 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 894 ggtttagatcccaacactcaagtccagtgactcacagtctctaaaactccagctccggga 835
Query: 233 gatcctgtcc-gggtttttggactctataggtgccagcacacacttgttattacacacaa 291
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 834 gatcctgtcctgtttttttggactccataggtgccagcacacacttgttattacacacaa 775
Query: 292 acacatgctcatatgtatatataaaaataaagcttaaaatattactacctggttcctaag 351
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 774 acacatgctcacatgtatatataaaaataaagcttaaaatattactacctggttcctagg 715
Query: 352 attaaatttagaaacattaaaagaacaaaataagttaccatgttgtgtaattattaagta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 attaaatttagaaacattaaaagaacaaaataagttaccatgttgtgtaattattaagta 655
Query: 412 ttaggtattattagttcttaatatctagtccttatttattaggtgtcttctgtgtttaat 471
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttaggtattactagttcttaatatctagtccttatttattaggtgtcttctgtgtttaat 595
Query: 472 tttatgttatgcttaatagtagtaacgagcatggcatttgtataanataaataacaatga 531
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 594 tttatgttatgcttaatagtagtaacgagcatggcatttgtataaaataaataacaatga 535
Query: 532 gtaaaaagtatatagtggagcacacctaaagtcatagcactgcagtggcagaggcagagg 591
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtaaaaagtatatggtggagcacacctaaagtcatagcactgcagtggcagaggcagagg 475
Query: 592 gataaccataagtttgaggctac 614
|||||||||||||||||||||||
Sbjct: 474 gataaccataagtttgaggctac 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_l02.g1 MSMg01no485_l02.g1 CHROMAT_FILE:
MSMg01no485_l02.g1 PHD_FILE: MSMg01no485_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:44 2005
(623 letters)
>mm_chr16_73956614_73957636
Length = 1023
Score = 1189 bits (615), Expect = 0.0
Identities = 621/623 (99%)
Strand = Plus / Plus
Query: 1 cagggaacaagccacctattactacagagcgaatggctgcatccaccgttttattgatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggaacaagccacctattactacagagcgaatggctgcatccaccgttttattgatat 260
Query: 61 ggaatcgcgtttcgtttcccagacaccagatctgtagaaatggggaagtaaaaaaagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatcgcgtttcgtttcccagacaccagatctgtagaaatggggaagtaaaaaaagagg 320
Query: 121 cagtatgaaatttccttttggagaatttggctactatcatcaaatgcatatttgctcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtatgaaatttccttttggagaatttggctactatcatcaaatgcatatttgctcaga 380
Query: 181 gtgatcaatgtactatatagtcttataaaggtgttctgtcactgacatttatagccatcc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gtgatcaatgtactatatagtcttataaaggtgttctgtcattgacatttatagccatcc 440
Query: 241 tatgaatatttaggttttttttgggggataacaatttgacaagctgaaactgtcacagac 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgaatatttaggtttttttggggggataacaatttgacaagctgaaactgtcacagac 500
Query: 301 ttatatatttcacaactctcgtgcgagtttccactgagcaaatcagaaggttcagtgact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatatatttcacaactctcgtgcgagtttccactgagcaaatcagaaggttcagtgact 560
Query: 361 ccctttgacacatcaggatagcgatgggtgacttcaaatttgacatttgtatagataaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctttgacacatcaggatagcgatgggtgacttcaaatttgacatttgtatagataaaa 620
Query: 421 tctcttactttgatctgctgaatgtatcaaaatttcttttacacataacccaatataaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcttactttgatctgctgaatgtatcaaaatttcttttacacataacccaatataaat 680
Query: 481 ttggtgattgtgtgctatgatgttaatgaaaagtagatacactttgctatcccactgtaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggtgattgtgtgctatgatgttaatgaaaagtagatacactttgctatcccactgtaa 740
Query: 541 cactttcaaattcattttgttatgttactataaggacatatatccttgtgaagcatgttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactttcaaattcattttgttatgttactataaggacatatatccttgtgaagcatgttt 800
Query: 601 gcttaaaatgggatggagaagac 623
|||||||||||||||||||||||
Sbjct: 801 gcttaaaatgggatggagaagac 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
