BAC Information

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BAC

Clone NameMSMg01-485M04
Chromosome16 (Build37)
Map Location 83,432,337 - 83,629,349
singlet/doubletdoublet
Overlap geneLOC100039572
Upstream geneEG665260, EG545172
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485M04.T7 (MSMg01no485_m04.b1)MSMg01-485M04.TJ (MSMg01no485_m04.g1)
ACCAG565128AG565129
length739743
length of high quality
(start - end)		569 (73 - 641)662 (82 - 743)
definitionCHROMAT_FILE: MSMg01no485_m04.b1 PHD_FILE: MSMg01no485_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:50 2005CHROMAT_FILE: MSMg01no485_m04.g1 PHD_FILE: MSMg01no485_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,432,337 - 83,432,905)(83,628,689 - 83,629,349)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGATAGCTTTCATAACCCTGAATGAATGTGCTCTCCTTCTAC
CCTTTTATCTGTTCTAGAAGCTCAGGGAATTGGGCAGCTAACTCGGGCTT
GATAAGTTTGTTTCTTTTGATGGGTGAGCACTTTTGGTTTCTTCCTAGTA
AATGCTGTCTCTGCCACAAACCAGATTTTCTCCACTATTTCAATCTAAAT
TTTTAAAACATTGCAAAAGATTCAAGGAATGTGGAGTTGATAGATGATAA
CAAAAATGTCTACAGATTGAAAATAATGAAGGCGTATCAGTTCTCTGGGT
CTTCTCTTTCCCACAGATTATGTGATTATAAGCAGTGATATGTAAATTCA
ATGGACCATGATTCATATTAACACAATCTGCAGAAGGAAGCTTCTATAAT
GGGTTCCTTCTTTTTGAATAGGCTTTAACTCAAATCATCTTTGGTGGGTT
ACTTCCCAAAGCTTTGTGCCACAATTTTATCAGCATATTTTTTGAGGCAG
ATCACCACTGTAGATAGAAGTGTCTGTAACTGGTTTGCAGCTACTATTCT
CTTTTGGTATTGCTGAGAGTACATTTCAATAACATGAATACTAGTCTTCA
GGGATGAATTCTTTGTAGGCAACAGGGTACTGCGTCCTTCTGTGTTTCAA
TGAGTTGTGTAAGTTTTGTCTTCAGTAATCAAGACTTCT

GAGACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATACATATTAAAGTTTTG
ATGAGATTTAAAAATACCAACCTTGACTAATGTAGTTAGCAGTGCATTTT
TATCCAGGTCAAAAATGAAAGCATTAGTTGAAAAGAACTCTCTGAAGCCT
ATGAGTATTTTAAAACTTCAATAATCAAACAAAAAGCATAGAAAATGGTG
CTTCTCTGATCTCAATGTAGAATAAAATATCTCCAAGTTAAGCTGACAAT
AGGACAGTTTCTTTTGGACCAATGCCCATTTCCCCAGTTTATCTGAGTAG
CAGTTGTATATCTTACGTGATACTGAAGATGAAAGAGGCAGAGTCCCTGA
AATGAATAATGAAACATTTTCCTTTAACTTCAATCCTAATTGTCCTGATA
GAAATACAGTTTGAATTCTTATTCAGGTACAGAAAATAAACAGACTACAG
CTGTTGGATTTCAGATAACATAAAAAAATAAATAAAAAAGTTCCACCGCA
TGTGTATAGTACATATATTTTGTCTCTGATTCCAATGTTGAAACATAGCA
ATAATTATTATGGACTAAATTTTGAGTTCTAGATTGAGCATATATAAGTG
GTAGGAACATCTCTTTTTGCAATNAAAGTATTCAACTGAATTACCCAAAA
TTAAAGAAATGCAAATTCTGATATAGTAATGGTTAATACTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_m04.b1 MSMg01no485_m04.b1 CHROMAT_FILE:
MSMg01no485_m04.b1 PHD_FILE: MSMg01no485_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:50 2005
         (569 letters)



>mm_chr16_83432137_83433105
          Length = 969

 Score = 1038 bits (537), Expect = 0.0
 Identities = 561/569 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgaatgaatgtgctctccttctacccttttatctgttctagaagctcagggaattg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgaatgaatgtgctctccttccacccttttatctgttctagaagctcagggaattg 260

                                                                       
Query: 61  ggcagctaactcgggcttgataagtttgtttcttttgatgggtgagcacttttggtttct 120
           |||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||
Sbjct: 261 ggcagctaactcaggcttgataagtgcgtttcttttgatgggtgatcacttttggtttct 320

                                                                       
Query: 121 tcctagtaaatgctgtctctgccacaaaccagattttctccactatttcaatctaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tcctagtaaatgctgtctctgccacaaaccagattttctccactattccaatctaaattt 380

                                                                       
Query: 181 ttaaaacattgcaaaagattcaaggaatgtggagttgatagatgataacaaaaatgtcta 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaacattggaaaagattcaaggaatgtggagttgatagatgataacaaaaatgtcta 440

                                                                       
Query: 241 cagattgaaaataatgaaggcgtatcagttctctgggtcttctctttcccacagattatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagattgaaaataatgaaggcgtatcagttctctgggtcttctctttcccacagattatg 500

                                                                       
Query: 301 tgattataagcagtgatatgtaaattcaatggaccatgattcatattaacacaatctgca 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tgattataagcagtgatatgtaaattcaatggaccatgattcaaattaacacaatctgca 560

                                                                       
Query: 361 gaaggaagcttctataatgggttccttctttttgaataggctttaactcaaatcatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggaagcttctataatgggttccttctttttgaataggctttaactcaaatcatcttt 620

                                                                       
Query: 421 ggtgggttacttcccaaagctttgtgccacaattttatcagcatattttttgaggcagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgggttacttcccaaagctttgtgccacaattttatcagcatattttttgaggcagat 680

                                                                       
Query: 481 caccactgtagatagaagtgtctgtaactggtttgcagctactattctcttttggtattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccactgtagatagaagtgtctgtaactggtttgcagctactattctcttttggtattg 740

                                        
Query: 541 ctgagagtacatttcaataacatgaatac 569
           |||||||||||||||||||||||||||||
Sbjct: 741 ctgagagtacatttcaataacatgaatac 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_m04.g1 MSMg01no485_m04.g1 CHROMAT_FILE:
MSMg01no485_m04.g1 PHD_FILE: MSMg01no485_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:50 2005
         (662 letters)



>mm_chr16_83628489_83629550
          Length = 1062

 Score = 1249 bits (646), Expect = 0.0
 Identities = 657/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacatattaaagttttgatgagatttaaaaataccaaccttgactaatgtagttagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tatacatattaaagttttgatgagatttaaaaataccaaccttgactaatgtagttagca 802

                                                                       
Query: 61  gtgcatttttatccaggtcaaaaatgaaagcattagttgaaaagaactctctgaagccta 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgcatatttatccaggtcaaaaatgaaagcattagttgaaaagaactctctgaagccta 742

                                                                       
Query: 121 tgagtattttaaaacttcaataatcaaacaaaaagcatagaaaatggtgcttctctgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagtattttaaaacttcaataatcaaacaaaaagcatagaaaatggtgcttctctgatc 682

                                                                       
Query: 181 tcaatgtagaataaaatatctccaagttaagctgacaataggacagtttcttttggacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaatgtagaataaaatatctccaagttaagctgacaataggacagtttcttttggacca 622

                                                                       
Query: 241 atgcccatttccccagtttatctgagtagcagttgtatatcttacgtgatactgaagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcccatttccccagtttatctgagtagcagttgtatatcttacgtgatactgaagatg 562

                                                                       
Query: 301 aaagaggcagagtccctgaaatgaataatgaaacattttcctttaacttcaatcctaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaggcagagtccctgaaatgaataatgaaacattttcctttaacttcaatcctaatt 502

                                                                       
Query: 361 gtcctgatagaaatacagtttgaattcttattcaggtacagaaaataaacagactacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctgatagaaatacagtttgaattcttattcaggtacagaaaataaacagactacagc 442

                                                                       
Query: 421 tgttggatttcagataacataaaaaaataaataaaaaagttccaccgcatgtgtatagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttggatttcagataacataaaaaaataaataaaaaagttccaccgcatgtgtatagta 382

                                                                       
Query: 481 catatattttgtctctgattccaatgttgaaacatagcaataattattatggactaaatt 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtattttgtctctgattccaatgttgaaacatagcaataattattatggactaaatt 322

                                                                       
Query: 541 ttgagttctagattgagcatatataagtggtaggaacatctctttttgcaatnaaagtat 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttgagttctagattgagcatatataagtggtaggaacatctctttttgcaataaaagtat 262

                                                                       
Query: 601 tcaactgaattacccaaaattaaagaaatgcaaattctgatatagtaatggttaatacta 660
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaatgaattacccaaaattaaagaaatgcaaattctgatatagtaatggttaatacta 202

            
Query: 661 a 661
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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