Query= MSMg01no486_f05.b1 MSMg01no486_f05.b1 CHROMAT_FILE:
MSMg01no486_f05.b1 PHD_FILE: MSMg01no486_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
(634 letters)
>mm_chr16_35509017_35510045
Length = 1029
Score = 1100 bits (569), Expect = 0.0
Identities = 612/631 (96%), Gaps = 11/631 (1%)
Strand = Plus / Plus
Query: 7 attctaggaggttcc---gagagtttcccagggaattccttctctgctgaagtttgctgg 63
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctaggag---cccctgagagcttcccagggaattccttctctgctgaagtttgctgg 263
Query: 64 agttagagctgttctctgctatttacaacccttcccttcttgtcatcgcctctctctgct 123
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 agttagagatgttctctgctatttacaacccttcccttcttgtcatcgcgtctctctgct 323
Query: 124 gctgtggctgctgcaggcctcaggtcccacccaggtccccatctctcacccctgagtcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctgtggctgctgcaggcctcaggtcccacccaggtccccatctctcacccctgagtcag 383
Query: 184 gtaggacagtccaggcttcttacgatccctccatctatggaggcttcacctttctagatc 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 gtaggacagtccaggcttcttacgatccctccatctctggaggcttcacctttctagatc 443
Query: 244 tttcctcagctgtaaaggtgtccttgccactctctcgcagcctgttctgcagtacatctc 303
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcctcagctgtaaaggtgtcctcgccactctctcgcagcctgttctgcagtacatctc 503
Query: 304 ttcctgctcctctccggagggagaccttgccatctgccctccctcatcatcgactcactg 363
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcctgctcctctccggag----accttgccatctgccctccctcatcatcgactcactg 559
Query: 364 ctcccttggtgtttctcataatctcagtgagctgaatcacctggtctcggtcctctgaga 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcccttggggtttctcataatctcagtgagctgaatcacctggtctcggtcctctgaga 619
Query: 424 cctgtcctttcttggtctgtctgctgtcctgagcaccgttccccataattgccttgggga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctgtcctttcttggtctgtctgctgtcctgagcaccgttccccataattgccttgggga 679
Query: 484 aggtctccatttcctctgtaatgcacaccctgcagttctgtctcccaggaaccgactgct 543
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 680 aggtctccatttcctctgtaatgcacaccctgcggttctgtctcccaggaac-gactgct 738
Query: 544 ctgtctctcctcaggtaattaattcattctctcacttcctagattaaactgcctgcctct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctgtctctcctcaggtaattaattcattctctcacttcctagattaaactgcctgcctct 798
Query: 604 caccgtgtcttcctttaagcttttccagagc 634
|||||||||||||||||||||||||||||||
Sbjct: 799 caccgtgtcttcctttaagcttttccagagc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1029
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1019
Effective search space: 635856
Effective search space used: 635856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_f05.g1 MSMg01no486_f05.g1 CHROMAT_FILE:
MSMg01no486_f05.g1 PHD_FILE: MSMg01no486_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
(534 letters)
>mm_chr16_35630913_35631849
Length = 937
Score = 953 bits (493), Expect = 0.0
Identities = 525/537 (97%), Gaps = 3/537 (0%)
Strand = Plus / Minus
Query: 1 agcatcaccactaatcctatggtacttgaactctgcagccagatggacaagacgtagagc 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 737 agcatcaccactaatcctatggtacttgaactctgcagccagatgggcaagatgtagagc 678
Query: 61 ttggggattacatgggtggtagacccacttggtcagagtgtagcag---agtgttcagga 117
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 677 ttggggattacgtgggtggtagacccacttggtcagagtgtagcagaacagagttcaggt 618
Query: 118 ttagagactagactgtagctgagagaggaaggattcccagctccaccgtcggctggggcc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttagagactagactgtagctgagagaggaaggattcccagctccaccgtcggctggggcc 558
Query: 178 tggtgggcctccgtgtctctgtctgtaaaatggggaactagttcatgcctggcttcctca 237
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggtgggcctccatatctctgtctgtaaaatggggaactagttcatgcctggcttcctca 498
Query: 238 tggtccacgggagacacatttaaagtctttattatggcaagcggatgtagcctggttttt 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggtccccgggagacacatttaaagtctttattatggcaagcggatgtagcctggttttt 438
Query: 298 ccaaagcatccttttcgcctcttcgatctgcctttggcccatccctcttcaggttcctgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccaaagcatccttttcgcctcttcgatctgcctttggcccatccctcttcaggttcctgg 378
Query: 358 actctttaggaataattaatctaggaagccctggccacctcagccccgctgagacgaaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 actctttaggaataattaatctaggaagccctggccacctcagccccgctgagacgaaac 318
Query: 418 gaggagacactgggccagaaagggaaggaggggccctgctgaaggaagccagggggtggg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaggagacactgggccagaaagggaaggaggggccctgctgaaggaagccagggggtggg 258
Query: 478 aacgggacactttaagctgggagattcctctccgtgacttggctgctggcccgggag 534
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 257 aacgggacactttaagctgggagattcctctccgtgatttggctgctggcccgggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 937
Length adjustment: 10
Effective length of query: 524
Effective length of database: 927
Effective search space: 485748
Effective search space used: 485748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
