Query= MSMg01no487_c05.b1 MSMg01no487_c05.b1 CHROMAT_FILE:
MSMg01no487_c05.b1 PHD_FILE: MSMg01no487_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:39 2005
(673 letters)
>mm_chr16_29196140_29197213
Length = 1074
Score = 1272 bits (658), Expect = 0.0
Identities = 670/674 (99%), Gaps = 1/674 (0%)
Strand = Plus / Minus
Query: 1 ttcagctagtctagttagctccagggatccttcatctcagcttcctgacggctagcatga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ttcagctagtctagttagctccggggatccttcatctcagcttcctgacggctagcatga 977
Query: 61 taggcagccgctgtccctgcttggagcttagcttctgaggattcaaactcagatccccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 taggcagccgctgtccctgcttggagcttagcttctgaggattcaaactcagatccccac 917
Query: 121 acttggcaggcaagcactttaggtcagccttctcccagccccagagactaggctcttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 acttggcaggcaagcactttaggtcagccttctcccagccccagagactaggctcttata 857
Query: 181 taacgtttctaaaccaaaccataaggtgtttcctctgcaggttgacattgtggctagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taacgtttctaaaccaaaccataaggtgtttcctctgcaggttgacattgtggctagtgg 797
Query: 241 cagtggcctccaggctctaaggcaatctaaaaatcacagtagctcgtctgtgctctagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cagtggcctccaggctctaaggcaatctaaaaatcacagtagctcgtctgtgctctagaa 737
Query: 301 gaaatgcgccttcgtgggttccatgagctatttatgtcgtcctgctgaccggagtgaaga 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 736 gaaatgcgccttcgtgggttccatgagctatttatgtcgtcctgctgaccagagtgaaga 677
Query: 361 tgtgttctgcagtcctgacgagtcagagaacagacaagagagtaatctgcccaaaatctc 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgtgttctgtagtcctgacgagtcagagaacagacaagagagtaatctgcccaaaatctc 617
Query: 421 gacaaaagggcaggaagaggaaaccaggagaccctcttccctcttatctaagggttgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gacaaaagggcaggaagaggaaaccaggagaccctcttccctcttatctaagggttgtgt 557
Query: 481 cccactgttccacaatgccagcgtcctggaatcagagagtgagatggcatggaactcatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cccactgttccacaatgccagcgtcctggaatcagagagtgagatggcatggaactcatg 497
Query: 541 atgacaccaggtcccacacaccactagtg-ttttttttctgcgagttttcatttgtacat 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 atgacaccaggtcccacacaccactagtgtttttttttctgcgagttttcatttgtacat 437
Query: 600 ctgtgacacagacagcctttgttaaaaagcacaatggaaaacatgtggattggagctaat 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctgtgacacagacagcctttgttaaaaagcacaatggaaaacatgtggattggagctaat 377
Query: 660 taaaatcatcaggg 673
||||||||||||||
Sbjct: 376 taaaatcatcaggg 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_c05.g1 MSMg01no487_c05.g1 CHROMAT_FILE:
MSMg01no487_c05.g1 PHD_FILE: MSMg01no487_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:40 2005
(655 letters)
>mm_chr16_29023070_29024123
Length = 1054
Score = 1162 bits (601), Expect = 0.0
Identities = 647/673 (96%), Gaps = 20/673 (2%)
Strand = Plus / Plus
Query: 1 tcctatctgagaatgggtaggcgtttcatctactcctgacccagtttctgtcctggagca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 184 tcctatctgagaatgggtaggcgtttcatctactcctgacccggtttctgtcctggagca 243
Query: 61 tgtgaccatgacaacctcacatgagaggatcatgacaacaaagcatgtagcacagaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 244 tgtgaccatgacaacctcacatgagaggatcatgacaacaaagcatgtagcacagaa-aa 302
Query: 121 -agagttctccatggtaatgaggtctctagatgggccctgagggtttag----------- 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagagttctccatggtaatgaggtctctagatgggccctgagggtttagccaataggctt 362
Query: 169 ------ccagacattccttccagcaaaaggtatttaatctctgatccaccctgagtaatt 222
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 363 tccttcccagacattccttcctgcaaaaggtatttaatctctgatccaccctgagtaagt 422
Query: 223 tgtatgcctccattttccactatgaataaacagtttggataagtaagtactatctctctc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtatgcctccattttccactatgaataaacagtttggataagtaagtactatctctctc 482
Query: 283 atcaagaaccactgtggtgggaagccttcatcagagctgagatacctaagtctccctaag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atcaagaaccactgtggtgggaagccttcatcagagctgagatacctaagtctccctaag 542
Query: 343 tcgcctgtagaaggctcctctgcacccaggatgcctacccttgagctaagcaggactccc 402
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcgcctgcagaaggctcctccgcacccaggatgcctacccttgagctaagcaggactccc 602
Query: 403 cctccttctggccccagacttggctgtgtcctccttgttctcaactcctcatggttccca 462
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 603 cctccttctggccccagacttggctgtgttctccttgttctcaactcctcatggttccca 662
Query: 463 gcagcatctgggtgtctgggagtatgggaaccccagcttcagcttcagcctcagcctgtg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gcagcatctgggtgtctgggagtatgggaaccccagcttcagcttcagcctcagcctgtg 722
Query: 523 tcatgttttagctgggctggggtccccatcttaagctactttttgccaaccccgagtggg 582
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcatgttttagctgggctgggg-ccccatcttaagctactttttgccaaccccgagtggg 781
Query: 583 tgttgttactctgagagcctggcactaccacggaggagaagatgcaatatagcctagtgt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tgttgttactctgagagcctggcactaccacggaggagaagatgcaatatagcctagtgt 841
Query: 643 cccccattttgtc 655
|||||||||||||
Sbjct: 842 cccccattttgtc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
