BAC Information

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BAC

Clone NameMSMg01-487C24
Chromosome16 (Build37)
Map Location 61,299,997 - 61,300,535
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487C24.T7 (MSMg01no487_c24.b1)MSMg01-487C24.TJ (MSMg01no487_c24.g1)
ACCAG566211AG566212
length1,579805
length of high quality
(start - end)		---539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no487_c24.b1 PHD_FILE: MSMg01no487_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:43 2005CHROMAT_FILE: MSMg01no487_c24.g1 PHD_FILE: MSMg01no487_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AGAGTTATTACGTAACTCTAGTACTNACTATCACTACTCACAGCCACAGA
ATAACAATAGCCAATATACAATACTCACACAAGTAAATAGAGAGAGAATG
AAATGAAGATAGAATTCGATATGATACTTTATCATCCACGCCATCAGCAG
TGTGAAGCAGCGTGCAACGTAATACTACGTTAACTTGTGTATAATGTGAT
TCATATGACAATAATAAATCTAAGACGACGACCAGTATCTGATGTGGTCA
TGTACAGTCTATGTGATAAGACTAACTATTATAGNGTCCCCAAATCGACG
AGACCTACAGTAGCTTAGTAGCTAGAGTATAGACGTGCGTGTGAGACAGC
GACGACGTGTGNGATATTGCGCGGAGCCACATGAATATACGTATTGGTGT
GATTGCCTGGTGTTACTCTATCGTAGAGCGTACGCACGGCTAGTANTACT
ATGAAAGGCACGNCAGACTAGCAGTCTTNCGGATATCATACGACGTAACG
ATGCTGCGTTACGCGACNTAGACACGTACATGCACGAATACAGATCTCTA
TGCCACGATGTCACTGCAGACGCGATGTTTGCGGAGACAAGTATACACGA
GCACTCTCGTATCTGCAACGNCGCATAGTTATAGTATGCCCTGCATACTA
ATTTACGTCATAACGTGCGGACGACAAGCAAGACTCGTATCGCTATATCA
TCGTGTCGATGTGTAGCGTAGCATCTGCGCACGTAGTGCAGGACTGCGAT
CGCATACAGAATATTCGTACTGCTCGACGACAGCGTAAGTAAGCGCGCTG
TTATACGTCAGCCAACGACGTATACTAATATGACACGCGGTAATATATAT
GGTAGACTGGCGCTGATAATATGCTCACTTCATTACTGATCTGTTCTCTG
TTCTCGCCACGCACTATTTTGNTGTTTGCACCGCAGCTCATACGTGACTC
TATTACTGATCTCGTNTCTGTTGCATATATATTGATTATACATATTAGAG
TTTCGACGACGCGACANCGCGTTATACAAAACCACGGATATGGACTGTAC
CACAGTGTGTCATTATACATGTGTCTCACCTGCATCTGTTTTGCTCACAC
TCGCNCTCACGATGTATGTCTCCGCACGCATCTCTATGGACCAGNCGCAA
TTACGTTTGATTAGCTGCTAGTTGTATCGTACTATGACAGCAGTCGCTAT
ACTAATAGATCAATATTGCACATGATGCACCATATATATTACTCGATATA
TATTCGTAGCGCAGCATCCTATATCCTACACCAACTTCATTATATATTTA
CCAGCGNTCGGCTGCGANTCGTGTACGTTANGTCGTATGTATACTGCTCA
TAGTACAGTCTGATGTCACTATCTCACTACACTNACTCTCGACGTGTATA
TCGTGCGATCGATGTGTCACACACGCANTCACGTATATTATNATGTCGCT
CGTGATTGATATTCATATCTCGCCGGCGCGCGAGCGCAACTATGANGATT
GGACTAGTAGGCGCATATTAGATACTNANTACGATGATCAAGTCACTATN
AGTACTCATCCATACNTCTCATGTGTCAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGGACCTCATTTTTA
AATAGGGTTATTTGATTCGCAAGCATATAACTTCTTGAGTTCTTTGTACA
TTTTGGATACTAGCCCTTTATCAGAAGTATGGGAGGTAAAGATGTTTTCC
CAATCTGTTGGTTGCCGTTTTGTCCTCTTGACAGTATCCTTTGCCTTAAG
GAAGCTTTAAAATTGTATGAGGTTCCATTTGTAGATTTTTGATCTTAGAG
CATAAGGCATTAATCAGAATGGATTATATGAAAACCTCAGGTGACAGCAG
ATGCTGGGGAGTTTGTGGAGAAAGAGGAACACTTCTCCATTACAGGTGAG
ATTGTAAGTGGGTAAATCCACTTTGAAATTTTTTAAATCAATACTATATA
AATCTATCCCTTTAAAAACAGCTAATGTTCTTAAAAGGATTCTGTTTAAA
GAGTTAGCCTATGCCATTGTTCAATGAGTCATTATATCACTGAACAATGT
TCAGGAAAATTTCCCTATGTCCATGTATTCAAGGCTCTTCCCCACTCTCT
CTTCTATTAGATTCAGTGTAATTGGTTTTATTGGAGGTCCTTGATCCACT
TGGACTTGAGCTTTGTATGATGAGNATTAATTGGAGCTGAAAGAGATTGC
AACTCCATAGGAANGATATCTACTAATCAGTCCACCTCCTCCAGAGCTCC
CAGGGGACTAAACAATCACCAAAGAGTATATGTTGGAGGATCTATTGCTC
CAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_c24.g1 MSMg01no487_c24.g1 CHROMAT_FILE:
MSMg01no487_c24.g1 PHD_FILE: MSMg01no487_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:43 2005
         (539 letters)



>mm_chr16_61299797_61300735
          Length = 939

 Score =  938 bits (485), Expect = 0.0
 Identities = 527/541 (97%), Gaps = 4/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctggacctcatttttaaatagggttatttgattcgcaagcatataactt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctttggacctcatttttaaatagggttatttgattcgcaagcatataactt 260

                                                                       
Query: 61  cttgagttctttgtacattttggatactagccctttatcagaagtatgggaggtaaagat 120
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cttgagttctttgtatattttggatactagccctttatcagaagaatgggaggtaaagat 320

                                                                       
Query: 121 gttttcccaatctgttggttgccgttttgtcctcttgacagtatcctttgccttaaggaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttcccaatctgttggttgctgttttgtcctcttgacagtatcctttgccttaaggaa 380

                                                                       
Query: 181 gctttaaaattgtatgaggttccatttgtagatttttgatcttagagcataaggcattaa 240
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gctttaaaattttatgaggttccatttgtcgatttttgatcttagagcataaggcattaa 440

                                                                       
Query: 241 tcagaatggattat-atgaaaacctcaggtgacagcagatgctggggagtttgtggagaa 299
           ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaatgg-ttaagatgaaaacctcaggtgacagcagatgctggggagtttgtggagaa 499

                                                                       
Query: 300 agaggaacacttctccattacaggtgag-attgtaagtgggtaaatccactttgaaattt 358
           ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 500 agaggaacacttctccattacaggt-aggattgtaagcgggtaaatccactttgaaattt 558

                                                                       
Query: 359 tttaaatcaatactatataaatctatccctttaaaaacagctaatgttcttaaaaggatt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttaaatcaatactatataaatctatccctttaaaaacagctaatgttcttaaaaggatt 618

                                                                       
Query: 419 ctgtttaaagagttagcctatgccattgttcaatgagtcattatatcactgaacaatgtt 478
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cggtttaaagagttagcctatgccattgttcaatgagtcattatatcactgaacaatgtt 678

                                                                       
Query: 479 caggaaaatttccctatgtccatgtattcaaggctcttccccactctctcttctattaga 538
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 caggaaaatttccctatgtccatgtgttcaaggctcttccccactctctcttctattaga 738

            
Query: 539 t 539
           |
Sbjct: 739 t 739



 Score =  147 bits (76), Expect = 2e-39
 Identities = 85/88 (96%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 239 aatcagaatggatt-atatgaaaacctcaggtgacagcagatgctggggagtttgtggag 297
           ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  aatcagaatgg-ttaagatgaaaacctcaggtgacagcagatgctggggagtttgtggag 32

                                       
Query: 298 aaagaggaacacttctccattacaggtg 325
           ||||||||||||||||||||||||||||
Sbjct: 31  aaagaggaacacttctccattacaggtg 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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