Query= MSMg01no487_f17.b1 MSMg01no487_f17.b1 CHROMAT_FILE:
MSMg01no487_f17.b1 PHD_FILE: MSMg01no487_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:56 2005
(679 letters)
>mm_chr16_90227140_90228218
Length = 1079
Score = 1073 bits (555), Expect = 0.0
Identities = 567/571 (99%)
Strand = Plus / Minus
Query: 109 taggtatttatttacagcagtggttctcaaccttcctaatactgtgatcttctaaagtta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 taggtatttatttacagcagtggttctcaaccttcctaatactgtgatcttctaaagtta 1020
Query: 169 ctgatccccaaccatgaaattatttttgttgctattttataattttggctactgttatga 228
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ctgatccccaaccacgaaattatttttgttgctattttataattttggctactgttatga 960
Query: 229 attgtaatataaatatctgattggcagaatagatgatatacaaccccaaaggggtcacga 288
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 959 attgtaatataaatatctgattggaagaatagatgatatacaaccccaaaggggtcacga 900
Query: 289 cccacaggttgagaacctcttacagttaaagttcttttcatcaaattacattagaagaca 348
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 899 cccacaggttgagaacctcttacagtcaaagttcttttcatcaaattacattagaagaca 840
Query: 349 agataacctagccagtagacactttctgccaaccctgatggcctatttgaccccagggac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 agataacctagccagtagacactttctgccaaccctgatggcctatttgaccccagggac 780
Query: 409 aataaaaggtgaaagaatatgaacttgttttcctcttagtgcacacaccctaaaaatgat 468
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aataaaaggtggaagaatatgaacttgttttcctcttagtgcacacaccctaaaaatgat 720
Query: 469 ttttaaaactacaaggtgctaggttaaacaaaaaacttgtcaaacttagctttatcgtac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttttaaaactacaaggtgctaggttaaacaaaaaacttgtcaaacttagctttatcgtac 660
Query: 529 ctagaagttcctttttgtatgttcccatttgacatttagatctgagctcttcctaatgat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctagaagttcctttttgtatgttcccatttgacatttagatctgagctcttcctaatgat 600
Query: 589 ggaagaaatgtgtctgtagctttgccaggcttcagctttctggtgaccctacttaggctt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggaagaaatgtgtctgtagctttgccaggcttcagctttctggtgaccctacttaggctt 540
Query: 649 ttaagtccttattagagtatcataaaacatg 679
|||||||||||||||||||||||||||||||
Sbjct: 539 ttaagtccttattagagtatcataaaacatg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_f17.g1 MSMg01no487_f17.g1 CHROMAT_FILE:
MSMg01no487_f17.g1 PHD_FILE: MSMg01no487_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:57 2005
(572 letters)
>mm_chr16_90098214_90099186
Length = 973
Score = 992 bits (513), Expect = 0.0
Identities = 558/573 (97%), Gaps = 1/573 (0%)
Strand = Plus / Plus
Query: 1 cactgtggaattgatttctcaatatgcctcagttctaatacggtgaccaaaccagtctgt 60
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 201 cactgtggaattgatttctcaatatgcctcagttctattaaggtgaccaaaccagtctgc 260
Query: 61 tgggcgacagacctcaggca-cagcagcctggggaaataccagccaggacacagtctctg 119
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcgacatacctcaggcaacagcagcctggggaaataccagccaggacacagtctctg 320
Query: 120 acgtaagaaggcagacagccacgtcgacccaatactaccatgctcgccttacctcccacc 179
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 321 acgtaagaaggcagacagccacgtcgacccagtactaccatgctcaccttacctcccacc 380
Query: 180 ccagatacagagcagcacaaaacacgaggaaagcagactcggaacgggatctgggctaga 239
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ccagaaacagagcagcacaaaacacgaggaaagcagactcggaacggtatctgggctaga 440
Query: 240 gcaggtgtgtgagatcacagggcaggtgagagcttgctgcctcattcaggaagcaaccta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaggtgtgtgagatcacagggcaggtgagagcttgctgcctcattcaggaagcaaccta 500
Query: 300 agacggctgcgcctagaccatccatccatctgcagcttcctggttcagcctgcaggctcg 359
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 501 agacggctgcgcctagaccatccatccgtctgcagcttcctggttcagtctgcaggctcg 560
Query: 360 gctgtactccactgcacaggaatcctaactgttagagattgctaatccaagtggccatac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtactccactgcacaggaatcctaactgttagagattgctaatccaagtggccatac 620
Query: 420 ttcaggcctggctactgccatttctctgcctaggggtgtctccatctctgagagcccaaa 479
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 621 ttcaggcctggctgctgccatttctctgcctaggggcgtctccatctctgagagcgcaaa 680
Query: 480 ggaaggtcagcggcagccagtggagccagggagccttcacaatcaagtctcctgtttgag 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaggtcagcggcagtcagtggagccagggagccttcacaatcaagtctcctgtttgag 740
Query: 540 taggattatgagtttgcctagagcaggaaccaa 572
|||||||||||||||||||||||||||||||||
Sbjct: 741 taggattatgagtttgcctagagcaggaaccaa 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
