BAC Information

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BAC

Clone NameMSMg01-487G14
Chromosome16 (Build37)
Map Location 45,449,381 - 45,450,056
singlet/doubletsinglet
Overlap geneGm609
Upstream geneWdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905
Downstream geneLOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487G14.T7 (MSMg01no487_g14.b1)MSMg01-487G14.TJ (MSMg01no487_g14.g1)
ACCAG566381AG566382
length755757
length of high quality
(start - end)
640 (48 - 687)676 (77 - 752)
definitionCHROMAT_FILE: MSMg01no487_g14.b1 PHD_FILE: MSMg01no487_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:01 2005CHROMAT_FILE: MSMg01no487_g14.g1 PHD_FILE: MSMg01no487_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTAATTCCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTTTTAATGATGGTGTCTTTTGCCCTGCAGAAGCTTTGCAACTTC
ATGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTCT
TCTATTCAGAAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTA
CTTTCTCCTTTATAAGTTTCAGTGTCTCTGGTTGTATGTGGAGTTCCTTA
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCG
CATTCTTCTACATGATAACCACCAGTTGTGCCACCACCATTTGTTGAAAA
TGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTAGGTCCATTTCTGGGTCTTCAATTCTATTCAATTT
GTCTACTTGCCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTT
TTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAT
GAATN
GCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTTGAGAGATTTATTATTTTT
AAATTATGCTTGTGACATGGGGTATGTGTCCCTGAGTGCATATACCCTCC
GAGGATACAAGAGGTTTATGTATCCCTTAGAGCTTGATTTATAGGTGCTT
GTGAGCCTTCTGATGTAGGTGCTTGGGAAAGACCTTGGGTATTCATGTAG
AACCCAATATGCTCCTAACTCTTACTTACTGAGTCACCTCTCAAGACTCC
GCACTTAAGCACTAGTTATTATCTTAACCTGAAGAAAACAAATGGACTAA
ATTTTCTTAATTCAATCATTCAGAATGAGCAGAAAACAATAGGACAATAT
TTATTGAATTCTTAAATTAGGGAAGCTTGCAGTGATAGAGGAATCCACAA
GACAAATTATTTATAGACATGTCCTGGATAGGAATGATTTTCAAAAGTTA
GAAGTCTTTTCTTAGATTCCAAGAAAGTGTCGAGAAAAGAGGATGAGATT
CTACTCACAGTCATATATGTTCAATTCTTAAGCCTGTTTATTACCATTTT
AGCATAAAATACCTATATAGGAAAGGAATCATATCTTTATGCTAGTAAAT
GTATCATTTACTATCAAATGTAAATTCTCAAACTTCATTCTCACCTGGAG
AATGATTTCAACAAGACATCAAGATAAAAGGTTCCTTTTACTTCCCATGT
TCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_g14.g1 MSMg01no487_g14.g1 CHROMAT_FILE:
MSMg01no487_g14.g1 PHD_FILE: MSMg01no487_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:01 2005
         (676 letters)



>mm_chr16_45449181_45450256
          Length = 1076

 Score = 1307 bits (676), Expect = 0.0
 Identities = 676/676 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttgagagatttattatttttaaattatgcttgtgacatggggtatgtgtccctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttgagagatttattatttttaaattatgcttgtgacatggggtatgtgtccctgag 260

                                                                       
Query: 61  tgcatataccctccgaggatacaagaggtttatgtatcccttagagcttgatttataggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatataccctccgaggatacaagaggtttatgtatcccttagagcttgatttataggt 320

                                                                       
Query: 121 gcttgtgagccttctgatgtaggtgcttgggaaagaccttgggtattcatgtagaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgtgagccttctgatgtaggtgcttgggaaagaccttgggtattcatgtagaaccca 380

                                                                       
Query: 181 atatgctcctaactcttacttactgagtcacctctcaagactccgcacttaagcactagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgctcctaactcttacttactgagtcacctctcaagactccgcacttaagcactagt 440

                                                                       
Query: 241 tattatcttaacctgaagaaaacaaatggactaaattttcttaattcaatcattcagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattatcttaacctgaagaaaacaaatggactaaattttcttaattcaatcattcagaat 500

                                                                       
Query: 301 gagcagaaaacaataggacaatatttattgaattcttaaattagggaagcttgcagtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcagaaaacaataggacaatatttattgaattcttaaattagggaagcttgcagtgat 560

                                                                       
Query: 361 agaggaatccacaagacaaattatttatagacatgtcctggataggaatgattttcaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggaatccacaagacaaattatttatagacatgtcctggataggaatgattttcaaaa 620

                                                                       
Query: 421 gttagaagtcttttcttagattccaagaaagtgtcgagaaaagaggatgagattctactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttagaagtcttttcttagattccaagaaagtgtcgagaaaagaggatgagattctactc 680

                                                                       
Query: 481 acagtcatatatgttcaattcttaagcctgtttattaccattttagcataaaatacctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagtcatatatgttcaattcttaagcctgtttattaccattttagcataaaatacctat 740

                                                                       
Query: 541 ataggaaaggaatcatatctttatgctagtaaatgtatcatttactatcaaatgtaaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataggaaaggaatcatatctttatgctagtaaatgtatcatttactatcaaatgtaaatt 800

                                                                       
Query: 601 ctcaaacttcattctcacctggagaatgatttcaacaagacatcaagataaaaggttcct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcaaacttcattctcacctggagaatgatttcaacaagacatcaagataaaaggttcct 860

                           
Query: 661 tttacttcccatgttc 676
           ||||||||||||||||
Sbjct: 861 tttacttcccatgttc 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)