Query= MSMg01no487_i21.b1 MSMg01no487_i21.b1 CHROMAT_FILE:
MSMg01no487_i21.b1 PHD_FILE: MSMg01no487_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:12 2005
(587 letters)
>mm_chr16_33496855_33497841
Length = 987
Score = 627 bits (324), Expect = 0.0
Identities = 531/622 (85%), Gaps = 56/622 (9%)
Strand = Plus / Plus
Query: 1 tccagataagtcccactttggactaatagtcagt-acctcacagcacccatttccctgtt 59
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||| ||
Sbjct: 201 tccagataagtcccactttggactaatagtcggtgac-tcacagcacccgtttccctttt 259
Query: 60 caggtgatgagacaaaccacgcctctgccatgttaatagcagactttttggattaagtaa 119
||||||| |||||||||||||||||||||| || || |||||||||||||||| |||| |
Sbjct: 260 caggtgacgagacaaaccacgcctctgccacgtcaacagcagactttttggatcaagtca 319
Query: 120 cttctcagaagaaagctgaggcacagcctgtccaccaggcttaccaaatgagctcctttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttctcagaagaaagctgaggcacagcctgtccaccaggcttaccaaatgagctcctttg 379
Query: 180 aacagcccttctgtgctctataccatggatccagagctggaatagcaactcagtttagca 239
| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcagcccttccgtgctccatatcatggatccagagctggaatagcaactcagtttagca 439
Query: 240 -tggccaatggacagg------------gaccagggacaagtg-tggaaatttcagaatt 285
|| |||||||||||| ||||||||||||||| || || ||||||||||
Sbjct: 440 ctg-ccaatggacaggtgaaccttcggggaccagggacaagtgctg-aattttcagaatt 497
Query: 286 tccgttcgtgaatgcaaatgataatagagctgagatgacatcttcaccagatgccaaaac 345
||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 498 tcccttggtgaatgtaaatgataatagagctgggatgacatcttcaccagatgccacaac 557
Query: 346 tggccata-ttgttggctaaaaag--------tgtgtaaataatagtggcactttagaac 396
|||||| | || ||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 558 tggccagactt-ttggctaaaaaaaaaaaaaatgtgtaaataatactggcactttagaac 616
Query: 397 agattaatcaagagtggagttactctgtaaattgtagtgctgtacagatctaagagcagt 456
|||||| |||||||||| ||| ||||||||| || |||||||||||| ||||||||||||
Sbjct: 617 agattactcaagagtggggttgctctgtaaaatggagtgctgtacagttctaagagcagt 676
Query: 457 gcattcatagtaagcaagcaatattcattcttaag--tagcaaggtaatccaataactgc 514
|| ||||||| ||||| | || ||| ||||||| |||||||||||||||
Sbjct: 677 gcgttcatag----caagc-----tgat----aagaatagcaagataatccaataactgc 723
Query: 515 att--gcatttggttca--cag--ttc-ttgaactgccttacatgtcag-caccgttaga 566
||| | ||||||| | ||| ||| |||||||||||||| |||| | ||||||||||
Sbjct: 724 attttg--tttggtt-agtcagcattccttgaactgccttacgtgtc-gtcaccgttaga 779
Query: 567 aaagcaag-gcattgcctgttt 587
|||||| ||||| |||||||
Sbjct: 780 gaagcaaatgcattacctgttt 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_i21.g1 MSMg01no487_i21.g1 CHROMAT_FILE:
MSMg01no487_i21.g1 PHD_FILE: MSMg01no487_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:12 2005
(687 letters)
>mm_chr8_40517376_40518462
Length = 1087
Score = 1261 bits (652), Expect = 0.0
Identities = 658/660 (99%)
Strand = Plus / Minus
Query: 1 agggatggatttgtaagatgtcaaaaggagaatttccaggaggtaagtgaaaatataaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agggatggatttgtaagatgtcaaaaggagaatttccaggaggtaagtgaaaatataaat 601
Query: 61 ccaggattcaggagaaaagtaagaactcaagatcctaataaggattgtgtgtaggtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccaggattcaggagaaaagtaagaactcaagatcctaataaggattgtgtgtaggtgttt 541
Query: 121 atggaacagatcagatagtggctcaagagggccaataagcaactgaagagaatgcaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atggaacagatcagatagtggctcaagagggccaataagcaactgaagagaatgcaggaa 481
Query: 181 aagccaacaaaaacggggagagtctcagaatagaatgaagcatgaggaggtttagtgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aagccaacaaaaacggggagagtctcagaatagaatgaagcatgaggaggtttagtgaca 421
Query: 241 ggcgtggaatatggagcgaagtgctgtagcataggcaaaaattaggaataaaatgtattc 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcgtggaaaagggagcgaagtgctgtagcataggcaaaaattaggaataaaatgtattc 361
Query: 301 atgtaacctagaaattaacaccaaactcaaacctaactgaagacatttggatgtagtcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atgtaacctagaaattaacaccaaactcaaacctaactgaagacatttggatgtagtcat 301
Query: 361 catgacacatagtgagggttattcatttaccattcaatgcacaaataggaagaaagcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catgacacatagtgagggttattcatttaccattcaatgcacaaataggaagaaagcatt 241
Query: 421 gaaaatcatagttggaacaacctcaaatatttgtatgaattggtgcactgggaagggcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaaatcatagttggaacaacctcaaatatttgtatgaattggtgcactgggaagggcac 181
Query: 481 ataaccctgtcaaatttctgctcaaaacgaatctcatcacaggagaaggaaccgacaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ataaccctgtcaaatttctgctcaaaacgaatctcatcacaggagaaggaaccgacaaaa 121
Query: 541 ttgaggaacattctataaagaaatcagcctgtgctcttcaaaaatgtcaaggtcaagaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ttgaggaacattctataaagaaatcagcctgtgctcttcaaaaatgtcaaggtcaagaaa 61
Query: 601 aataaaggcttagaactaaagaaaattaaagcaatacagcaagtgtatgtaatactggat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aataaaggcttagaactaaagaaaattaaagcaatacagcaagtgtatgtaatactggat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
