Query= MSMg01no487_m04.b1 MSMg01no487_m04.b1 CHROMAT_FILE:
MSMg01no487_m04.b1 PHD_FILE: MSMg01no487_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:28 2005
(613 letters)
>mm_chr16_37115292_37116306
Length = 1015
Score = 1096 bits (567), Expect = 0.0
Identities = 603/615 (98%), Gaps = 2/615 (0%)
Strand = Plus / Plus
Query: 1 atgataatatccattctacatggggaaaga-aaattcggccattatcttgggattttaac 59
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 atgataatatccattccacatggggaaagacaaattcggccattatcttgggattttaac 260
Query: 60 cggggttccagcctttctgttgtacagcatctttgcctttgataagtctcctttatgata 119
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aggggttccagcctttctgttgtacagcatctttgcctttgataagtctcccttatgata 320
Query: 120 acttcagatggactataatggaacattttgtagaagaaactggcttctagcagttgaata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcagatggactataatggaacattttgtagaagaaactggcttctagcagttgaata 380
Query: 180 gtgatgctgggaataaatttggtttccctgaataatggtttctcaaagcagtcacagctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatgctgggaataaatttggtttccctgaataatggtttctcaaagcagtcacagctt 440
Query: 240 ctttctaatgttagaactggtaccatttcttatccttatacttcagcattagctggaaag 299
||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcgaaggttagaactggtaccacttcttatccttatacttcagcattagctggaaag 500
Query: 300 aaaaaaaaa-tagcaatcaaaacatgctacaaatgttacttaccaaatcactactgagct 358
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aaaaaaaaaatagcaatcaaaacatgctacaaatgttacttagcaaatcactactgagct 560
Query: 359 aatcataattaaatcttaaattgtaatacaattgtacggctgcctttgtttacttgggca 418
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 aatcataattaaatcttaaaatgtaatacaattgtacggctgcctttatttacttgggca 620
Query: 419 gctcacctcatgtgcgtgcttggaaaacgcttctgcgctggtcatcatgcccgcagtctt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcacctcatgtgcgtgcttggaaaacgcttctgcgctggtcatcatgcccgcagtctt 680
Query: 479 ctcttccagctcgcccagacgctgccctctctcatcaagtgcaatccgggctcgggtcag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttccagctcgcccagacgctgccctctctcatcaagtgcaatccgggctcgggtcag 740
Query: 539 ctctcccatcaccccgccagcagcgcctttcatcccttctatactacctggcccagggat 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctcccatcaccccgccagcagcacctttcatcccttctatactacctggcccagggat 800
Query: 599 gtgctgtgcgaggct 613
|||||||||||||||
Sbjct: 801 gtgctgtgcgaggct 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1015
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1005
Effective search space: 606015
Effective search space used: 606015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_m04.g1 MSMg01no487_m04.g1 CHROMAT_FILE:
MSMg01no487_m04.g1 PHD_FILE: MSMg01no487_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:28 2005
(669 letters)
>mm_chr16_37328760_37329828
Length = 1069
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Minus
Query: 1 tcactttgtagaccaggctggcctcggactcagaaatcctcctgcctctgcctctggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcactttgtagaccaggctggcctcggactcagaaatcctcctgcctctgcctctggaga 688
Query: 61 gtgctgggattaaaggcgtgtgccaccacacctggctgtatctttgatttttaattattg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 687 gtgctgggattaaaggcgtgtgccaccatacctggctgtatctttgatttttaattattg 628
Query: 121 aatacatgaatatatattgagatacattggagaaggaacccaggtctaaacattaaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aatacatgaatatatattgagatacattggagaaggaacccaggtctaaacattaaactc 568
Query: 181 ttttatattacgtgtgtaccttatacatgtagtctgatggtaattttgtacattttttca 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 ttttatattacgtgtgtaccttatacacgtagtctgatggtaattttgtacattttttca 508
Query: 241 atgcttttatattttgaatgtaatcacagtagatcaggtatgaaattttctctttgtgga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgcttttacattttgaatgtaatcacagtagatcaggtatgaaattttctctttgtgga 448
Query: 301 aaaggttaacttttggaacatctgggattttgtatatttggattatggatcttcaacctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaggttaacttttggaacatctgggattttgtatatttggattatggatcttcaacctg 388
Query: 361 tacttgatataattctttttgatattatgattttagatgtgtaacaatgcatttgtatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacttgatataattctttttgatattatgattttagatgtgtaacaatgcatttgtatat 328
Query: 421 attattactgacattcacatttttatttcctatattaaaatttaaatttaaacttagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 attattactgacattcacatttttatttcctatattaaaatttaaatttaaacttagatt 268
Query: 481 taaatgttaatatagaaaatattacatttaatataggaaatattaaacttaataagagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taaatgttaatatagaaaatattacatttaatataggaaatattaaacttaataagagaa 208
Query: 541 aatatttgcatatcagaacatcctcttattgtgactctattataattttaaaatttattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aatatttgcatatcagaacatcctcttattgtgactctattataattttaaaatttattt 148
Query: 601 aatattttctaaaccattaagctttctacctactctcttcccaccaatttaaatattttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aatattttctaaaccattaagctttctacctactctcttcccaccaatttaaatattttg 88
Query: 661 cttgtatct 669
|||||||||
Sbjct: 87 cttgtatct 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
