Query= MSMg01no488_j16.b1 MSMg01no488_j16.b1 CHROMAT_FILE:
MSMg01no488_j16.b1 PHD_FILE: MSMg01no488_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:34 2005
(648 letters)
>mm_chr16_83218384_83219431
Length = 1048
Score = 1226 bits (634), Expect = 0.0
Identities = 646/652 (99%), Gaps = 4/652 (0%)
Strand = Plus / Plus
Query: 1 agtcaaatatgctcaaaatacacatcagttttgagaattgtaacctgaggaagcttcaga 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 197 agtcaaatatgctcaaaatacacatcagttttgagaattgtaacttgaggaagcttcaga 256
Query: 61 taaatgaaataaaatattttttttcaattttcagaggcaggaaatagtcctgtttcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaatgaaataaaatattttttttcaattttcagaggcaggaaatagtcctgtttcactc 316
Query: 121 aagcctcatgtttattttgcatttgatataatatttcccagtccagcaataataggggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagcctcatgtttattttgcatttgatataatatttcccagtccagcaataataggggtg 376
Query: 181 aatatatatatatatatatatatatatatatatatatatat----cctgaaaaataaaac 236
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 aatatatatatatatatatatatatatatatatatatatatatatcctgaaaaataaaac 436
Query: 237 atattatattattatatatggaaatgttgggcaactataaaagtatttcatagttccaaa 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atattataatattatatatggaaatgttgggcaactataaaagtatttcatagttccaaa 496
Query: 297 acaaaacctagaagaggcatcttaaactgtagttctcattctcagataacttctggctaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acaaaacctagaagaggcatcttaaactgtagttctcattctcagataacttctggctaa 556
Query: 357 tggaacaaattttggaatttcccataatgtttactgtatgtgctctcattcataagtggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggaacaaattttggaatttcccataatgtttactgtatgtgctctcattcataagtggt 616
Query: 417 ggaataaattgctcttttaatatcatattttaattgctggtatgttagaataatcttctt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggaataaattgctcttttaatatcatattttaattgctggtatgttagaataatcttctt 676
Query: 477 atgtactatgtaaaagttatcttcatattatctaaacactgatttctataccagcagaat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgtactatgtaaaagttatcttcatattatctaaacactgatttctataccagcagaat 736
Query: 537 attgagtattgtccagatgttgctattgttaattttactggggtatcacctgctgattat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attgagtattgtccagatgttgctattgttaattttactggggtatcacctgctgattat 796
Query: 597 tttgtaaacattcttctccattaccttctgactagtttaataaagagctgat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tttgtaaacattcttctccattaccttctgactagtttaataaagagctgat 848
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 182 atatatatatatatatatatatatatatatatatatatat 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atatatatatatatatatatatatatatatatatatatat 378
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 182 atatatatatatatatatatatatatatatatatatatat 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atatatatatatatatatatatatatatatatatatatat 380
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 182 atatatatatatatatatatatatatatatatatatatat 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatatatatatatatatatatatatatatatatatatat 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 8
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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