Query= MSMg01no489_k23.b1 MSMg01no489_k23.b1 CHROMAT_FILE:
MSMg01no489_k23.b1 PHD_FILE: MSMg01no489_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:01 2005
(580 letters)
>mm_chr16_79060362_79061341
Length = 980
Score = 1052 bits (544), Expect = 0.0
Identities = 568/576 (98%)
Strand = Plus / Plus
Query: 5 gaattcagtaaattttcaaatttggttaggaccaaagagtaagcgagacacattttcaaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaaataagcaaatttggttaggaccaaagagtaagcgagacacattttcaaa 264
Query: 65 ttatttgatttgcctagtgttgttatatcacttcctatatttaaggttgtggatcatttg 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttattcgatttgcctagtgttgttatatcacttcctatatttaaggttgtggatcatttg 324
Query: 125 tatgtaggtttaaagctatatatctaattttgatatggattattgtttttgaaacagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgtaggtttaaagctatatatctaattttgatatggattattgtttttgaaacagaaa 384
Query: 185 tcagcattgccagtgtttcttcttgatggcacacttggatcatgttatctgggaaaaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagcattgccagtgtttcttcttgatggcacacttggatcatgttatctgggaaaaggt 444
Query: 245 ttcggaaaatgccaggaataaatatatgtaacattcgccatcctcctgtatgagtaacat 304
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggaaaatgccaggaataaatacatgtaacattcgccatcctcctgtatgagtaacat 504
Query: 305 agttatataaaatagatttaaaatattccatagactgcactttttaccccaatacatggc 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 agttatataaaatagatttaaaatattccatagactgtactttttaccccaatacatggc 564
Query: 365 aactgcatttcaaagtacatagttcaattctgtgtgtttgaaatttatccaagaacactt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactgcatttcaaagtacatagttcaattctgtgtgtttgaaatttatccaagaacactt 624
Query: 425 gatttgggaattttcagtgaaaaaaaaagtgttaagtgctgttttgagttgttgttggat 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatttgggaattttcagtggaaaaaaaagtgttaagtgctgttttgagttgttgttggat 684
Query: 485 aacagacccaggacctgtcttaggaagcatggacctagtggataggtgatttttctaaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacagacccaggacctgtcttaggaagcatggacctagtggataggtgatttttctaaat 744
Query: 545 tagttccttattcaaaactttatctttaactaatgt 580
||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagttccttattcaaaactttatctttaactaatgt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_k23.g1 MSMg01no489_k23.g1 CHROMAT_FILE:
MSMg01no489_k23.g1 PHD_FILE: MSMg01no489_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:01 2005
(528 letters)
>mm_chr16_79113338_79114263
Length = 926
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 1 tcacccccagataactcttagcattgtaatgactcacacttagaatagtctgagaagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tcacccccagataactcttagcattgtaatgactcacacttagaatagtctgagaagagt 667
Query: 61 agtgagtcctgttctctgatacataagttactatctaccatgcatgctgaggaaccagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agtgagtcctgttctctgatacataagttactatctaccatgcatgctgaggaaccagga 607
Query: 121 acaaatttattacattggctggttttatttaaaagcagcttattagatgccccaaactag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaaatttattacattggctggttttatttaaaagcagcttattagatgccccaaactag 547
Query: 181 tttagaagacttcttgataaatgagtctagaaataaatgttttctttaaaaaaaaatggt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 546 tttagaagacttcttgataaatgagtctagaaataaatgttttcttt-aaaaaaaatggt 488
Query: 241 acttttacatcattcccagaggaagctcaaatatttggaggttttgaataattgtatgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acttttacatcattcccagaggaagctcaaatatttggaggttttgaataattgtatgtt 428
Query: 301 ttagtattaagaccaggccaacgttcatagtttatgaaaagtatgtgcattgataataac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttagtattaagaccaggccaacgttcatagtttatgaaaagtatgtgcattgataataac 368
Query: 361 atgaaataagttatccaaggagagatctgttgattggagagtttcataacaattagcagt 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 367 atgaaataagttatccaaggagagatctgttgactggagagtttcataacaattagcagt 308
Query: 421 aagtaaaagcaagaaataattgtgagagtagaaaatctatacatagatgttaaagacaaa 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagtaaaagcaa-aaataattgtgagagtagaaaatctatacatagatgttaaagacaaa 249
Query: 481 cagcgtgtctgcaatattacctctataatttgttttaactattctgct 528
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cagcatgtctgcaatattacctctataatttgttttaactattctgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 926
Length adjustment: 10
Effective length of query: 518
Effective length of database: 916
Effective search space: 474488
Effective search space used: 474488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
