Query= MSMg01no490_i18.b1 MSMg01no490_i18.b1 CHROMAT_FILE:
MSMg01no490_i18.b1 PHD_FILE: MSMg01no490_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:10 2005
(656 letters)
>mm_chr16_36883365_36884420
Length = 1056
Score = 920 bits (476), Expect = 0.0
Identities = 482/484 (99%)
Strand = Plus / Minus
Query: 173 tatgtgtatgggcgctttgcttgtgtgtaatgtctagtctatgcatctaggtatgtgcat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tatgtgtatgggcgctttgcttgtgtgtaatgtctagtctatgcatctaggtatgtgcat 997
Query: 233 gcagtgcccaccagggtcagtctttggatcccctggagttacaggcagttgtgagctacc 292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gcagtgcccaccagggccagtctttggatcccctggagttacaggcagttgtgagctacc 937
Query: 293 acaggggaactgggaactgaacccaggttctctcaaagagcagccagtgcttttaattac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 acaggggaactgggaactgaacccaggttctctcaaagagcagccagtgcttttaattac 877
Query: 353 tggtccatttctctagcccctaatctttttaagttataagtaaatctgaagttgtactaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tggtccatttctctagcccctaatctttttaagttataagtaaatctgaagttgtactaa 817
Query: 413 aattaatttgcttttataactattatgttacacagtgagagaaatggcatttaccagtcc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aattaatttgcttttataactattatgttacacagtgagagaaatggcatttaccagtcc 757
Query: 473 atataatctataaaataatattatgcagtgacagaaaaaaatactgacatggaactgatg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 atataatctataaaataatattatgcagtgacagaaaaaaatactgacatggaactgatg 697
Query: 533 tgtatataacactacaaactacagtgaattttatgttctttaagtgatatctagacctta 592
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 696 tgtatataacactacaaactacagtgaattttatgttctttaagtgatatctggacctta 637
Query: 593 aaaaactcccaaaagggagaaatatgaaaagtaatttgcatcttcctgctcagggtaatc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaaaactcccaaaagggagaaatatgaaaagtaatttgcatcttcctgctcagggtaatc 577
Query: 653 atgg 656
||||
Sbjct: 576 atgg 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_i18.g1 MSMg01no490_i18.g1 CHROMAT_FILE:
MSMg01no490_i18.g1 PHD_FILE: MSMg01no490_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:10 2005
(585 letters)
>mm_chr16_36817968_36818952
Length = 985
Score = 748 bits (387), Expect = 0.0
Identities = 402/407 (98%)
Strand = Plus / Plus
Query: 1 caaaatctcaatagtgaaaactaaacccaataccaattaaaaatgattcaatgatttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatctcaatagtgaaaactaaacccaataccaattaaaaatgattcaatgatttaat 260
Query: 61 aattcaatagattcaaataagcatttaacaaaagaagaaaaacaaatagccaataagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcaatagattcaaataagcatttaacaaaagaagaaaaacaaatagccaataagcac 320
Query: 121 atgaaaacatgttcaacatcgctaaccctatgaaaagtctgtaaaatgtaattattgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 atgaaaacatgttcaacatcgctaaccctatgaaaagtctgtaaaatgtgattattgcaa 380
Query: 181 ctatatggaaaacagtttagagactctacaaaaaataagcaataaaaacaaaaaataccc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatatggaaaacagtttagagattctacaaaaaataagcaataaaaacaaaaaataccc 440
Query: 241 catatatatagatttaccttatgctctagcaatcccagtgctagatggtaagccataata 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatatatagatttaccttacgctctagcaatcccagtgctagatggtaagccataata 500
Query: 301 accacattttcttcattccttctctagactgtgacattgtattattagcaacagaaaaca 360
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 accacattttcttcatcccttctctagactgtggcattgtattattagcaacagaaaaca 560
Query: 361 gactgaggacaggtcctgctcagggccatgtgtcaccatgagaagaa 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactgaggacaggtcctgctcagggccatgtgtcaccatgagaagaa 607
Score = 93.5 bits (48), Expect = 4e-23
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 360 agactgaggacaggtcctgctcagggccatgtgtcaccatgagaagaa 407
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 agactgaggacaggtcctgctcagggccatgtgtcaccatgagaagaa 983
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
