BAC Information

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BAC

Clone NameMSMg01-491B21
Chromosome16 (Build37)
Map Location 93,349,566 - 93,520,119
singlet/doubletdoublet
Overlap geneLOC100040747
Upstream geneKcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491B21.T7 (MSMg01no491_b21.b1)MSMg01-491B21.TJ (MSMg01no491_b21.g1)
ACCAG569187AG569188
length744749
length of high quality
(start - end)		708 (37 - 744)664 (68 - 731)
definitionCHROMAT_FILE: MSMg01no491_b21.b1 PHD_FILE: MSMg01no491_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:55 2005CHROMAT_FILE: MSMg01no491_b21.g1 PHD_FILE: MSMg01no491_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,519,554 - 93,520,119)(93,349,566 - 93,350,229)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAG
ATCATTCACTATTTGCTTAAAACAGATGGTTTTGGGCTTTCAGAGATCCT
ACCCACACATTATAAAAGGTTTTATTATAGAGTTTGAAGTTCTGAGTCAA
AGTTTTCCAGAAGGATGTGCGCGGTACCTAAAGGAGCAAGGGTAGGAAAT
CAACAAGATGCAAGGATGAGGTACAGCTGTTAAATATTTGGAAGCTTTAT
CAGAGCAGATGATACAGGACAAGGTAATTGAGAAAACTGTACAACACCCT
AAAATCAGAAGGCATGCTGCATGGGGGCAGAGATGTACATGGAAACTATA
AGGTTATTGAAGAGAATCACGGTGTCGGAGTGGTACACCACACGGGCTCT
TATGGCTACAGGCTGTGACTGTGCGACAAGATTATATTGCTAGGGACACT
GTGAATTCACGACATGGAGAAACCAAGCTGGGAAAAGCCATGACTGAGCT
AGAAGCTCCCTCCATGCTGGCTAGTGTTCACAAGATCAGAAGGTACTGTG
CAAGCTCTTAGGCGAGTATGATTGCCAATGATTCTGCCTCCTTATGGGCC
CTGAATGCTAACACCATAAGCATGGCATGCAGCTCTATGACTGCTCCAGG
TGAAAGCAGTTATTTTACAATTGAATTTAAGGTCCTCTCCACAGGAAGAG
ATCTAGGTTTGAGAGTGAAAGCAAGAAGAAACATTGTGGCTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTCCCACTTGGTGCAGGACTTGCCTATCTTT
CTTGAGGGATATAATTTACTCTGCGGTTGTGTGACTAGGCATGGCCCCCA
AAGATTCATGTGTTTGAATGCTTGGCCATAGGGAGTTGCACTATTAGGAG
GTGTGGCCTTGTTGGCGTAGGTGTGGCCTTGTTGGAGGAAGTGTGTCACT
GTGGGAGTGGTCTTTAAGGAAGACTCCCACATAGAAGAATGGCCCAGTGA
GACACAGCCTCCTTCTGTTGCCTGTGGATCAGGATATAGAACTCTCAGCT
CCTTCTCCAGTGCCATGTCTGCCTGCATGCTGCCATGTCTTTTGCCATGA
TTATAATGGACTAAACCTCTAACAATGGTAAGCCGGCCCCAATTAAATGT
TGTCTTTTATAAGGGTTGCTTGGGTCATGGTGTCTCTTCACAGCAACAGA
CCTTAACTAAGACACCCTCCTATATTTCTGTCATAAGCATGTCTGTGCAC
AGTGAGTGAGATGCAAACCTGTCTGTAGCTTATATTGGCCCTTGAAGTCC
TTCCCTTTGAAGGAAGTTCAGCCTCGGCTTCTGCTGATCCCAGGGAATCC
ACCAGCTCGAGGCTATTTTTCATTTGTTTCAATACTATACTGTTGCTTGA
TGTGGGGCCTTGGTTTGTGTCTTGCTGGTGCGTTTTGTCTTGAAACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_b21.b1 MSMg01no491_b21.b1 CHROMAT_FILE:
MSMg01no491_b21.b1 PHD_FILE: MSMg01no491_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:55 2005
         (708 letters)



>mm_chr16_93519554_93520661
          Length = 1108

 Score = 1025 bits (530), Expect = 0.0
 Identities = 557/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagatcattcactatttgcttaaaacagatggttttgggctttcagagatcct 64
           |||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 566 gaattccaagatcaatcactatttgtttaaaacagatggttttgggctctcagagatcct 507

                                                                       
Query: 65  acccacacattataaaaggttttattatagagtttgaagttctgagtcaaagttttccag 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 acccacacattataaaaggttttattatagagtttgaagttctgagtccaagttttccag 447

                                                                       
Query: 125 aaggatgtgcgcggtacctaaaggagcaagggtaggaaatcaacaagatgcaaggatgag 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaggatgtgcacggtacctaaaggagcaagggtaggaaatcaacaagatgcaaggatgag 387

                                                                       
Query: 185 gtacagctgttaaatatttggaagctttatcagagcagatgatacaggacaaggtaattg 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 gtacagctgttaaatatttggaagctttatcagtgcagatgatacaggacaaggtaattg 327

                                                                       
Query: 245 agaaaactgtacaacaccctaaaatcagaaggcatgctgcatgggggcagagatgtacat 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaaaactgtacaacagcctaaaatcagaaggcatgctgcatgggggcagagatgtacat 267

                                                                       
Query: 305 ggaaactataaggttattgaagagaatcacggtgtcggagtggtacaccacacgggctct 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 266 ggaaactataaggttattgaagagaatcacggtgttggagtggtacaccacacgggctct 207

                                                                       
Query: 365 tatggctacaggctgtgactgtgcgacaagattatattgctagggacactgtgaattcac 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 tatggctacaggctgtgactgtgagacaagattatattgctagggacactgtgaattcac 147

                                                                       
Query: 425 gacatggagaaaccaagctgggaaaagccatgactgagctagaagctccctccatgctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gacatggagaaaccaagctgggaaaagccatgactgagctagaagctccctccatgctgg 87

                                                                       
Query: 485 ctagtgttcacaagatcagaaggtactgtgcaagctcttaggcgagtatgattgccaatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ctagtgttcacaagatcagaaggtactgtgcaagctcttaggcgagtatgattgccaatg 27

                                     
Query: 545 attctgcctccttatgggccctgaat 570
           ||||||||||||||||||||||||||
Sbjct: 26  attctgcctccttatgggccctgaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no491_b21.g1 MSMg01no491_b21.g1 CHROMAT_FILE:
MSMg01no491_b21.g1 PHD_FILE: MSMg01no491_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:55 2005
         (664 letters)



>mm_chr16_93349366_93350429
          Length = 1064

 Score = 1199 bits (620), Expect = 0.0
 Identities = 653/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcccacttggtgcaggacttgcctatctttcttgagggatataatttactctgcggt 60
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcctcccatttggtgcaggacttgcctatctttcttgagggatgtaatttactctgcggt 260

                                                                       
Query: 61  tgtgtgactaggcatggcccccaaagattcatgtgtttgaatgcttggccatagggagtt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgtgtgactaggcatggcccccaaagattcacgtgtttgaatgcttggccatagggagtt 320

                                                                       
Query: 121 gcactattaggaggtgtggccttgttggcgtaggtgtggccttgttggaggaagtgtgtc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gcactattaggaggtgtggccttgttggagtaggtgtggccttgttggaggaagtgtgtc 380

                                                                       
Query: 181 actgtgggagtggtctttaaggaagactcccacatagaagaatggcccagtgagacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtgggagtggtctttaaggaagactcccacatagaagaatggcccagtgagacacag 440

                                                                       
Query: 241 cctccttctgttgcctgtggatcaggatatagaactctcagctccttctccagtgccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccttctgttgcctgtggatcaggatatagaactctcagctccttctccagtgccatg 500

                                                                       
Query: 301 tctgcctgcatgctgccatgtcttttgccatgattataatggactaaacctctaacaatg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tctgcctgcatgctgccatgtcttttgccatgattataatggactaaaccactaacaatg 560

                                                                       
Query: 361 gtaagccggccccaattaaatgttgtcttttataagggttgcttgggtcatggtgtctct 420
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagccagcctcaattaaatgttgtcttttataagggttgcttgggtcatggtgtctct 620

                                                                       
Query: 421 tcacagcaacagaccttaactaagacaccctcctatatttctgtcataagcatgtctgtg 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatagcaacagaccttaactaagacaccctcctatatttctgtcataagcatgtctgtg 680

                                                                       
Query: 481 cacagtgagtgagatgcaaacctgtctgtagcttatattggcccttgaagtccttccctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 cacagtgagtgagatgcaaacctgtctgtagcttatattggcccttgaagtccttccctc 740

                                                                       
Query: 541 tgaaggaagttcagcctcggcttctgctgatcccagggaatccaccagctcgaggctatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaggaagttcagcctcggcttctgctgatcccagggaatccaccagctcgaggctatt 800

                                                                       
Query: 601 tttcatttgtttcaatactatactgttgcttgatgtggggccttggtttgtgtcttgctg 660
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 tttcatttgtttctatactatactgttgcttgatgtggggccttggtttgtgtctggctg 860

               
Query: 661 gtgc 664
           ||||
Sbjct: 861 gtgc 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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