BAC Information

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BAC

Clone NameMSMg01-491D01
Chromosome16 (Build37)
Map Location 63,265,106 - 63,265,684
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491D01.T7 (MSMg01no491_d01.b1)MSMg01-491D01.TJ (MSMg01no491_d01.g1)
ACCAG569243AG569244
length756760
length of high quality
(start - end)
635 (60 - 694)585 (53 - 637)
definitionCHROMAT_FILE: MSMg01no491_d01.b1 PHD_FILE: MSMg01no491_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:01 2005CHROMAT_FILE: MSMg01no491_d01.g1 PHD_FILE: MSMg01no491_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATAGGTCGAGGATCCGCGGAATTCAAACATGCC
TTCCAAAGGATATGTATTACTGAGGCAGGGGGAGGGGAAATGGGATAGGA
AGTTTTGGGATAGGAGACCTGGAAAGGGGAAAATGTTTGAAATGTAAGTA
AAAAAAATATCCAATCCCCCCCACCCCCCAAAAAAAAGGAAGAAAATTCA
CCCAAGAGGAGTAGACAGCAGGAAATAATCAAACTCAGGGGTGAAATCAA
CCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACAAGGAGTT
GGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACT
AGAGGGCACAGGGACAACATCCTAATTAGCAAAATCAGAAATGAAAAGGG
AGGCATAACAACAGATCCTGAAGAAATTCAAAACACCATCAGATTCTTCT
ACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAA
TTTCTAGACAGATACCAGGTACCAAAGTTAACTCAGGATCAAGTTAAAGA
TCTAAACAGTCCCATATCTCCTAAAGAAATAGAAGCAGTCATTAATAGTC
TCCCAGCCAAAAAAAGCCCAGGACCAGATGGGTTTAGTTCAGAGTTCTAC
CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCCCCA
AATAGAATTAGAAGGAACTCTACCCAACTCATTGTATGAAGCCACAGTTA
CTCTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTCCCAATTCTTGGTAGCCAAGAAAATGCAATTAGAGCCAGATAGAAA
GGGTGATAATGTGATGCAGAACTAATAAGAGTCCATGAAGCCAGGCTGTG
CACCTGGCAGTAATTACATCATTAACACCTGAAAAGATGAAAGCTGATTA
ATGAGATACAGATGCAAATTCTGAGGCTTCCAGATTCAAATATACTTAAC
AATATGAATATATGATACACAAAGGCGATCAAGGATGTATCACCTAGCAT
GGATTAAAGTAACGGACAGAAAAGAGTGATATTTCAGAGTTGCTACAAAA
GGCGTCAGGAAAAATTTACAAGAACTCAAATGTGAGCAGTTTTAATGCTT
ACTGTTTTGAATAGTGTTTCATAATAATGAATGAAAGTAATAGCTTCAAA
GCTACAAAAATGGGAATGCAGCTTACTTTATAATACTAATTGTATTATCT
GTATATGTTTTTACAAGTTCATCTGAACTCCAGTCTATAAGCAGAGGATG
AGGTAGAGTATGATGCTAGTTCATACGTTTGAGAATGTTCTCAGGTGATT
TGAGTTTTCGGAAGCCGCAGTATCACCTGTAGTAGTATAATATTTTTAAC
ATAGGGAAATACATTTTGAGTTAAGAAACTGTAACTGATATTCTTTATTT
AATTACTCAGTAATGTCTACTTTTTAATTTCAGCCAAATCTTTCTACTTC
CTCGGAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_d01.g1 MSMg01no491_d01.g1 CHROMAT_FILE:
MSMg01no491_d01.g1 PHD_FILE: MSMg01no491_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:01 2005
         (585 letters)



>mm_chr16_63264901_63265884
          Length = 984

 Score = 1075 bits (556), Expect = 0.0
 Identities = 574/580 (98%), Gaps = 1/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcttggtagccaagaaaatgcaattagagccagatagaaagggtgataatgtgatgc 65
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 784 aattcttggtagccaagaaaatgcaattagagccagataggaagggtgataatgtgatgc 725

                                                                       
Query: 66  agaactaataagagtccatgaagccaggctgtgcacctggcagtaattacatcattaaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agaactaataagagtccatgaagccaggctgtgcacctggcagtaattacatcattaaca 665

                                                                       
Query: 126 cctgaaaagatgaaagctgattaatgagatacagatgcaaattctgaggcttccagattc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctgaaaagatgaaagctgattaatgagatacagatgcaaattctgaggcttccagattc 605

                                                                       
Query: 186 aaatatacttaacaatatgaatatatgatacacaaaggcgatcaaggatgtatcacctag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatatacttaacaatatgaatatatgatacacaaaggcgatcaaggatgtatcacctag 545

                                                                       
Query: 246 catggattaaagtaacggacagaaaagagtgatatttcagagttgctacaaaaggcgtca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 catggattaaagtaacggacagaaaagagtgatatttcagagttgctacaaaaggcgtca 485

                                                                       
Query: 306 ggaaaaatttacaagaactcaaatgtgagcagttttaatgcttactgttttgaatagtgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggaaaaatttacaagaactcaaatgtgagcagttttaatgcttactgttttgaatagtgt 425

                                                                       
Query: 366 ttcataataatgaatgaaagtaatagcttcaaagctacaaaaatgggaatgcagcttact 425
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 424 ttcataataatgaatgaaagtaatagcttcaaagctacaaaaataggaatgcagcttact 365

                                                                       
Query: 426 ttataatactaattgtattatctgtatatgtttttacaagttcatctgaactccagtcta 485
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttataaaacta-ttgtattatctgtatatgtttttacaagttcatctgaactccagtcta 306

                                                                       
Query: 486 taagcagaggatgaggtagagtatgatgctagttcatacgtttgagaatgttctcaggtg 545
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 305 taagcagaggatgaggtagagtatgatgctagttcatatgtttgagaatgttctcaggtg 246

                                                   
Query: 546 atttgagttttcggaagccgcagtatcacctgtagtagta 585
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 atttgagttttcggaagccgcagcatcacctgtagtagta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)