BAC Information

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BAC

Clone NameMSMg01-491J07
Chromosome16 (Build37)
Map Location 84,422,331 - 84,488,297
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039572, EG621729, LOC640489, LOC665664
Downstream geneLOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491J07.T7 (MSMg01no491_j07.b1)MSMg01-491J07.TJ (MSMg01no491_j07.g1)
ACCAG569541AG569542
length751753
length of high quality
(start - end)		605 (32 - 636)601 (57 - 657)
definitionCHROMAT_FILE: MSMg01no491_j07.b1 PHD_FILE: MSMg01no491_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:32 2005CHROMAT_FILE: MSMg01no491_j07.g1 PHD_FILE: MSMg01no491_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,422,331 - 84,422,931)(84,487,697 - 84,488,297)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCATTCTCTG
TTCCCATAAAAATAAAATAAATGAGCCTAGTAATAATTTCTTAAAGCATT
GATAAGATACAAAACTTAATGCATCTTTTGCTTGTACTGTTGTTTTGCCT
TCTGAAATAAAATGTTTGACCTATATAATGCCATTGTATATTCTTATGAT
TTAAATGTGTGTGTTTGCTTCTGTATTTTGCAGAATATAATTATGGATTG
CTCTCCAATAACCATGTAATATGACATCATTTGCTCTCAGTCTGAAAGAC
TGCATCAGTTCCCCTGGTTCTCCTTCACCAACGTATCGTCGTCGTCAGGA
GCACTGCTTTAATCTTTGCAGTGGCTAAGGCAGCTTTGCCGACACTCTTG
AAGTCAAGCTCTGTACACAAATAGTCTCACATCTCTCCTGCTTTCATCTT
CTAGATATTTTCATATGTATGACTTCCTGAGCTTTTACATTCACAGCTTT
CATCTACTTAGGACTTTCTATTATAAATGCATCTTAGGGTTAATATATGA
GCTTTGGCAGGACAAACTTAGAAGAAATATATCTTTTAGTGGATTCAAAC
TTAATTATATAAGGAACTGGGAGGGCCACCCACCCATCTAAAAATTTTTA
ACCAAGAATTTTCCCTGTCTAAAGGAAATGCATGTACAAAAATGGAGCAT
AAACTGAAGGAAAGGCTATCCAGAGACCGTCCCACATTGTGATCCATTCC
A

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCTCAATATTTGGTATGTATTCACCCTACCTAAACTAACCCATGAGAGT
CTCAGGATGAGTCTGTAATATAGTGTGAAGTTAGCGTGGCAATGTAGCCA
AAGCCACACAGCAGTAAGTTTCAGAGGCGAAATTTGCATTTGTGTTTGTC
TGGTGTCAAAACTCATATTATATATTCCTGTCTATATGTTTAATTCCGTG
AACCTATCCATGAACTGTTAACTTCTTTAGTGTACAAAACAATTTAAAAA
ATAATGATTGTTTCTTAACACTCACCGTGTCCTTCTAACAAAAAATTCTG
AGACCCAAGGCTGTGATCCAAAGAATGAATAGTAAGATACAGAGTCATTT
TGAAGGTGCCAGTGGTAGAGGTTTTATTTACTTGGGGTTTTTTTGACATT
GACATCATGCATAAAAACCGGAAGCTGTAACTATCTCTGTTGTATATTTT
GGTTCTTTTCCTCGACTTGCTTGTCTGACTTTCTTTGTCTGTAGGAATTT
AGTCAATAAAATTATTTGGCTTCTAGGAGTATGAGCAATGAAAAAAACCT
AAGAAGTTATTATTTTTTTCAGCAATAGTTAATGGATATGGTTTAGTGAC
TATGAAGTGTTCCTAATTATGTTTTCAAGGTTATTTACTTTTATAATATG
GCTGGATTCATATGTGTATGCCATGGGCATGTGGGTACTCACAGAAGGCA
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_j07.b1 MSMg01no491_j07.b1 CHROMAT_FILE:
MSMg01no491_j07.b1 PHD_FILE: MSMg01no491_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:32 2005
         (605 letters)



>mm_chr16_84422127_84423131
          Length = 1005

 Score = 1116 bits (577), Expect = 0.0
 Identities = 595/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcattctctgttcccataaaaataaaataaatgagcctagtaataatttcttaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcattctctgtccccataaaaataaaataaatgagcctagtaataatttcttaaa 264

                                                                       
Query: 65  gcattgataagatacaaaacttaatgcatcttttgcttgtactgttgttttgccttctga 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 gcattgataagatacaaaacttaatgcatctttttcttgtactgttgttttgccttctga 324

                                                                       
Query: 125 aataaaatgtttgacctatataatgccattgtatattcttatgatttaaatgtgtgtgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataaaatgtttgacctatataatgccattgtatattcttatgatttaaatgtgtgtgtt 384

                                                                       
Query: 185 tgcttctgtattttgcagaatataattatggattgctctccaataaccatgtaatatgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttctgtattttgcagaatataattatggattgctctccaataaccatgtaatatgac 444

                                                                       
Query: 245 atcatttgctctcagtctgaaagactgcatcagttcccctggttctccttcaccaacgta 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 atcatttgctctcagtctgaaagactgcatcagttcccctggtgctccttcaccaacgta 504

                                                                       
Query: 305 tcgtcgtcgtcaggagcactgctttaatctttgcagtggctaaggcagctttgccgacac 364
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 tcgtcgtcgtcaggagcacagctttaatcttcgcagtggctaaggcagctttgccgacac 564

                                                                       
Query: 365 tcttgaagtcaagctctgtacacaaatagtctcacatctctcctgctttcatcttctaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttgaagtcaagctctgtacacaaatagtctcacatctctcctgctttcatcttctaga 624

                                                                       
Query: 425 tattttcatatgtatgacttcctgagcttttacattcacagctttcatctacttaggact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattttcatatgtatgacttcctgagcttttacattcacagctttcatctacttaggact 684

                                                                       
Query: 485 ttctattataaatgcatcttagggttaatatatgagctttggcaggacaaacttagaaga 544
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 ttctattataaatgcatcttagggttaagatatgagctttggcaggacaaacttagaaga 744

                                                                       
Query: 545 aatatatcttttagtggattcaaacttaattatataaggaactgggagggccacccaccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatatatcttttagtggattcaaacttaattatataaggaactgggagggccacccaccc 804

            
Query: 605 a 605
           |
Sbjct: 805 a 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_j07.g1 MSMg01no491_j07.g1 CHROMAT_FILE:
MSMg01no491_j07.g1 PHD_FILE: MSMg01no491_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:32 2005
         (601 letters)



>mm_chr16_84487334_84488334
          Length = 1001

 Score = 1139 bits (589), Expect = 0.0
 Identities = 598/601 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttggtatgtattcaccctacctaaactaacccatgagagtctcaggatgagtctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 atatttggtatgtattcaccctacctaaactaacccatgagagtctcaggatgagtctgt 905

                                                                       
Query: 61  aatatagtgtgaagttagcgtggcaatgtagccaaagccacacagcagtaagtttcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aatatagtgtgaagttagcgtggcaatgtagccaaagccacacagcagtaagtttcagag 845

                                                                       
Query: 121 gcgaaatttgcatttgtgtttgtctggtgtcaaaactcatattatatattcctgtctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gcgaaatttgcatttgtgtttgtctggtgtcaaaactcatattatatattcctgtctata 785

                                                                       
Query: 181 tgtttaattccgtgaacctatccatgaactgttaacttctttagtgtacaaaacaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgtttaattccgtgaacctatccatgaactgttaacttctttagtgtacaaaacaattta 725

                                                                       
Query: 241 aaaaataatgattgtttcttaacactcaccgtgtccttctaacaaaaaattctgagaccc 300
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaaaataatgattgtttcaaaacactcaccgtgtccttctaacaaaaaattctgagaccc 665

                                                                       
Query: 301 aaggctgtgatccaaagaatgaatagtaagatacagagtcattttgaaggtgccagtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aaggctgtgatccaaagaatgaatagtaagatacagagtcattttgaaggtgccagtggt 605

                                                                       
Query: 361 agaggttttatttacttggggtttttttgacattgacatcatgcataaaaaccggaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaggttttatttacttggggtttttttgacattgacatcatgcataaaaaccggaagct 545

                                                                       
Query: 421 gtaactatctctgttgtatattttggttcttttcctcgacttgcttgtctgactttcttt 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtaagtatctctgttgtatattttggttcttttcctcgacttgcttgtctgactttcttt 485

                                                                       
Query: 481 gtctgtaggaatttagtcaataaaattatttggcttctaggagtatgagcaatgaaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtctgtaggaatttagtcaataaaattatttggcttctaggagtatgagcaatgaaaaaa 425

                                                                       
Query: 541 acctaagaagttattatttttttcagcaatagttaatggatatggtttagtgactatgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acctaagaagttattatttttttcagcaatagttaatggatatggtttagtgactatgaa 365

            
Query: 601 g 601
           |
Sbjct: 364 g 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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